Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc144g00015 ATGANNNNNNNNNNCCTGGCCCTCAAGATCAATGCCAAGCTTGGAGGCAGTAATGTAGAGCTCAGTCATATGTTCCCTTTCTTTGAGGGTGATAGGCATGTTATGTTTGTTGGGGCTGATGTCAATCATCCTGGTTCTCGGGACAACAAGAGTCCATCTATTGCTGCTGTGGTTGCAACTGTTAATTGGCCTGCAGCAAATCGTTATGCAGCACGTGTTTGCCCACAGTACAATCGGAGTGAGAAAATACTAAACTTTGGGGAAGTTTGCTCTGAGCTTGTTGCATGTTATAGCAGGATAAATGGAGTCAGGCCAGAAAGAATCATCATTTTTCGTGATGGGGTGAGTGAGTACCAGTTTGATATGGTTCTTAACGAAGAGCTACATGATTTGAAGAGAGAATTCCAAAGATTAAACTACTTCCCTACAATCACTCTTATTGTAGCACAAAAACGACATCAAACTCGATTCTTTCCAGAGGGTTGGAAGGATGGGTCTTCCAGCGGCAATATTTTGCCGGGGACGGTTGTTGATGCAAAAGTTACTCACCCTTTTGAGTTTGACTTCTACCTTTGTAGTTACTATGGAAGCATAGGTACCAGCAAACCCACTCACTACCATGTTTTATGGGATGAACACAAGTTTAAATCTGATGAATTGCAGAAGCTTATATATGACATGTGCTTCACCTTTGCAAAGTGCACTAAACCTGTATCCTTAGTTCCTCCGGTGTACTATGCCGACCTCGCTGCTTATAGAGGACGATTATACCATGAAGCACTGGTTGGGATGCAATCTATGAGATCAGTAGGATCCTCATCTTATAAGGCTTCTTTTGAGCAAGGATTTTACAGGTTGCATCCTGACTTGGAAAACATGATGTTCTTTATCTAA 894 0.4195 MXXXXLALKINAKLGGSNVELSHMFPFFEGDRHVMFVGADVNHPGSRDNKSPSIAAVVATVNWPAANRYAARVCPQYNRSEKILNFGEVCSELVACYSRINGVRPERIIIFRDGVSEYQFDMVLNEELHDLKREFQRLNYFPTITLIVAQKRHQTRFFPEGWKDGSSSGNILPGTVVDAKVTHPFEFDFYLCSYYGSIGTSKPTHYHVLWDEHKFKSDELQKLIYDMCFTFAKCTKPVSLVPPVYYADLAAYRGRLYHEALVGMQSMRSVGSSSYKASFEQGFYRLHPDLENMMFFI 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc144g00015 297 Gene3D - 29 297 IPR036397 GO:0003676
Stsc144g00015 297 ProSiteProfiles Piwi domain profile. 1 259 IPR003165 GO:0003676
Stsc144g00015 297 SMART Piwi_a_2 1 258 IPR003165 GO:0003676
Stsc144g00015 297 Pfam Piwi domain 6 255 IPR003165 GO:0003676
Stsc144g00015 297 SUPERFAMILY Ribonuclease H-like 6 259 IPR012337 -
Stsc144g00015 297 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 6 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc144g00015 Stsc-Chr144 85496 88128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc144g00015 6 259 Eukaryotic Initiation Factors Gene Family AT1G48410 48.551 1.61e-77 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc144g00015 K11593 - gmx:100783571 504.212