Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1448g00003 ATGACTGGTACTGGCAGAGAAATCCTCCACAAGATAAAGGCAAAAGCAGGGTTTGGAACATTGACACCAAACACATGTACAGGGAAAGGAAAAAGCAAGATGTCAAAGCACGTTACACATGGCTTCCATTTGGTTAAGGGAAAATCAAGTCACCCTATGGAAGATTATCTAGTTTCAGAATTTAAGCATGAGAATGACAGAGAGTTAGGATTGTTTGCTATTTTTGATGGCCATTTAGGCCATGATGTTGCAAGCTATTTGCAAAACCACCTTTTACAAAACATCTTGAACCAGCATGACTTCTGGACCGACATAGAAAGCGCAGTGAAGAGATCATATCTTGAGACAGATGAGAAAATATTGGAACAAGCACTTGTCTTGGGGAGGGGAGGATCCACGGCGGTTACCGCAATACTAATCGACGGCCAAAAGCTCGTGGTAGCAAACATTGGCGACTCGCGAGCCGTCATTTGTGAAAACGGGAAGGCCAAGCAGCTATCAGTTGATCATGAACCAAGCAGGGAGAAGAAATCTATTGAGAAACGTGGTGGTTTTGTATCAAATATTCCAGGGGATGTCCCTCGTGTAGATGGACAGCTAGCAGTAGCAAGGGCTTTTGGTGACAAGAGCTTGAAGATGCATCTCAGTTCAGAACCTGATGTGTTCATAGTTGATGTTGATCACCACACCGAATTCCTTATTCTTGCAAGTGATGGAATATGGAAGGTTATGTCAAACCAAGAAGCTGTGGATTCTATTAGACAAATAAAGGATGCCGAGGCTGCAGCAAAACACTTGATACAAGAGGCTGTTTCCAAGAAAAGCAAGGATGACATTTCCTGCATAGTTGTGAGGTTCCAATGA 864 0.4317 MTGTGREILHKIKAKAGFGTLTPNTCTGKGKSKMSKHVTHGFHLVKGKSSHPMEDYLVSEFKHENDRELGLFAIFDGHLGHDVASYLQNHLLQNILNQHDFWTDIESAVKRSYLETDEKILEQALVLGRGGSTAVTAILIDGQKLVVANIGDSRAVICENGKAKQLSVDHEPSREKKSIEKRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKMHLSSEPDVFIVDVDHHTEFLILASDGIWKVMSNQEAVDSIRQIKDAEAAAKHLIQEAVSKKSKDDISCIVVRFQ 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1448g00003 287 Gene3D - 33 287 IPR036457 -
Stsc1448g00003 287 FunFam Probable protein phosphatase 2C 39 29 287 - -
Stsc1448g00003 287 SMART PP2C_SIG_2 44 286 IPR001932 -
Stsc1448g00003 287 ProSiteProfiles PPM-type phosphatase domain profile. 39 286 IPR001932 -
Stsc1448g00003 287 Pfam Protein phosphatase 2C 49 279 IPR001932 -
Stsc1448g00003 287 SMART PP2C_4 35 284 IPR001932 -
Stsc1448g00003 287 CDD PP2Cc 46 286 IPR001932 -
Stsc1448g00003 287 SUPERFAMILY PP2C-like 33 286 IPR036457 -
Stsc1448g00003 287 PANTHER PROTEIN PHOSPHATASE 34 286 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1448g00003 Stsc-Chr1448 10804 13741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1448g00003 28 287 PP2C-type Phosphatase Gene Family AT4G28400 74.615 1.89e-144 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1448g00003 K17506 - gmx:100819846 479.944