Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc141g00010 ATGGTACATGTCCCACTTAGGCCCTTAAGGTGTGTTTCGGTGTGCCAATCTGCGCTAATACCAGCTGGAGGGTTTGAGGCTCCACTCAGGAATTTGGCTACTATTTCTTTATCAAGGCCACATTCAACTATATCAGGAAGACCCATTGTACAATTTGTGCATCAATTTATCCCTGCCCTTGGTATCATTGGTTTTGCTGTGTGGGGTCTTGAGCCACTTCTGCGCCTGAGCAGGAAACTATTTCTGCAAAAGACTGACAAAAGCTGGAAGAAAAGTAGTTTGCATCATTTTATGAAATCTTATCTTCAGCCTTTGCTGCTATGGACTGGGGTTATGCTCTTATGCAGGGATTTAGATCCATTAGTCTTACCATCGGAAACCAGTCAGGCTGTGAAGCAACGGCTGCTGAGTTTTGTGAGATCCTTGTCAACAGTCCTCACATTTGCTTATTGTTCTTCAAGCTTAATTCAGCAAGCACAAAAAAGTTGTATGGAGATGAATGACTCCAGTGATGAAAGAAATATGAGCATTGATTTTACTGGTAAAGCTGTATATACTGCTATATGGGTAGCTGCTGTGTCACTGTTCATGGAGTTGCTGGGTTTCTCCACACAAAAATGGTTGACTGCTGGTGGTTTGGGCACGGTATTGCTTTCTCTTGCAGGCCGTGAGATATTCATGAACTTCCTTTCAAGTATAATGATTCATACAACTCGGCCATTTGTTGTGAATGAGCGGATTAAAACAAAGATTAAAGACGATGAGGTTTCTGGTAGAGTTGAGCATGTAGGCTGGTGGTCACCAACAGTTGTTAGAGGTGCTGATTGTGAAGCTGTACACATTCCTAACCAGAAGTTGAGTGTAAATATTGTGAGGAATCTTAGTAAGAAATCGCATTGGCGCATCAAGACTCACCTTGCTATCAGTCACTTGGATATTAACAAGATCAATAATATCTTAGCTGATATGCGCAAGGTTTTGGCTAAAAATCCTCAAATAGAGCAGAAAAGACTGCACAGAAGGGTTTTTCTGGAGGATATCAATCCAGAAAATCAGGCTCTTATGATATTAATATCTTGCTTTGTTAAAACTTCACATTCTGAAGAGTACCTTCGTGTTAAGGAGGCTATTCTTTTGGATCTTCTGAGAGTTATCGGTCATCATGGAGCTCGACTAGCGACCCCCATCCGCACAATTCATAAGATGTACAGTGTCAGTGATTTAGAAGGCGATCCATTTGATGAGACCCTATTCACTCGTTCGAGAGCTAAGGCTAATCGTGCATTCTCATCAATGGAATCACCTTACAATGTTAAGCCTTCAAGTCATTCGACCATCACGGATGAGGAGAAGGATACCAAGTTTGATGAAATCTTGACATCTGACTTAAAGGTAGATGATGACTCTGCAGGGCCATCAACCTCCACATCCAGTGTAAACTCCAACAGCAAGAAATTTAAGTCGTCTACTGAATCCAAAACCGAGAATATGAATCGAGACAATCCGGTCCAGAAGACATCCAAATCCATGCATCCTAAGCAAAGAACAGGAAGTGCGGGAAACAGGACATCACCGAAAGTTTTGTCAACTTCAAAGAAGTCTAGCAGAGGAGAGACTACTAATTCTGTTACTTCTTCACCATCAAAGAAAGGTGAAGAAAAAGATAAATCCGGTAGCTCGTCATCATCAACTATTCCTTCCTTGAAAGAGAATATTGTTCTTGATGCTGCCATACTGGGAGTGAAACGAACACTTGAAATAGAAGACAAAATTAGTCCACCTCTCCCTGCAGAGCCTCAAGAATTCGCTATCCAACAGAAAGGGCATGAACCTCGGGGAACTAAGGATTACAAGGATGGTAAGAAGTCTCCTAATGCTAATTAG 1884 0.4177 MVHVPLRPLRCVSVCQSALIPAGGFEAPLRNLATISLSRPHSTISGRPIVQFVHQFIPALGIIGFAVWGLEPLLRLSRKLFLQKTDKSWKKSSLHHFMKSYLQPLLLWTGVMLLCRDLDPLVLPSETSQAVKQRLLSFVRSLSTVLTFAYCSSSLIQQAQKSCMEMNDSSDERNMSIDFTGKAVYTAIWVAAVSLFMELLGFSTQKWLTAGGLGTVLLSLAGREIFMNFLSSIMIHTTRPFVVNERIKTKIKDDEVSGRVEHVGWWSPTVVRGADCEAVHIPNQKLSVNIVRNLSKKSHWRIKTHLAISHLDINKINNILADMRKVLAKNPQIEQKRLHRRVFLEDINPENQALMILISCFVKTSHSEEYLRVKEAILLDLLRVIGHHGARLATPIRTIHKMYSVSDLEGDPFDETLFTRSRAKANRAFSSMESPYNVKPSSHSTITDEEKDTKFDEILTSDLKVDDDSAGPSTSTSSVNSNSKKFKSSTESKTENMNRDNPVQKTSKSMHPKQRTGSAGNRTSPKVLSTSKKSSRGETTNSVTSSPSKKGEEKDKSGSSSSSTIPSLKENIVLDAAILGVKRTLEIEDKISPPLPAEPQEFAIQQKGHEPRGTKDYKDGKKSPNAN 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc141g00010 627 MobiDBLite consensus disorder prediction 590 627 - -
Stsc141g00010 627 Pfam Mechanosensitive ion channel 182 391 IPR006685 GO:0016020|GO:0055085
Stsc141g00010 627 SUPERFAMILY Sm-like ribonucleoproteins 225 295 IPR010920 -
Stsc141g00010 627 MobiDBLite consensus disorder prediction 467 487 - -
Stsc141g00010 627 MobiDBLite consensus disorder prediction 431 573 - -
Stsc141g00010 627 MobiDBLite consensus disorder prediction 608 627 - -
Stsc141g00010 627 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 12 623 IPR045042 -
Stsc141g00010 627 MobiDBLite consensus disorder prediction 495 547 - -
Stsc141g00010 627 Gene3D - 135 239 - -
Stsc141g00010 627 MobiDBLite consensus disorder prediction 444 464 - -
Stsc141g00010 627 Gene3D - 240 293 IPR023408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc141g00010 Stsc-Chr141 56929 61735 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc141g00010 7 626 Mechanosensitive Ion Channel Family AT5G10490 50.776 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc141g00010 K22047 - gmx:100797302 779.245