Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc141g00009 ATGCAGAACAACGATAACAACAGCAACAAAGAAGAAGCCGAACGCCTGATAGGAATCGCAGAGAAGCTTCTACAGAACCGCGATCTCAACGGCGCCAAAGACTTCGCCATCCTCGCCCAAGAAACCGAGCCCCTTCTAGAAACTTCCGACCAGATCCTCGCCATCGCCGACGTCCTCCTCGTCTCCGACTCCACCACCCCCGATGACACCCCGCAATGGTACCAAATCCTCCAAGTCGACGTGTCACACTCTCAAGACCTCCACGTCATCAGGTCCAACTACCGCAGGCTCGCCCTCCTCCTCCACCCTGACAAGAACCGCTTCCCCTTCGCCCACCATGCATTCGCCCTCGTTTCCGACGCCTGGACCGTCTTATCCGACCCGGCCCAAAAACTCGCCTACGATTCGGGCCTCAACCGGGTTCAGGGGAATGTTTCCGGTTCGGTTCAGCAGGAGAAGCTTCCGGTTCGGAGAGGGAGCGATTCTTCTTTGGGGAACTTCTGGACGGCGTGTCCGTACTGTTACTTGATGTATGAGTACCCTAGGGTTTACGAAGGTTGTTGCTTGAGGTGCCAAAACGACAGTTGCGAGAGGTCGTTTCACGGTGCTGCTGTTACTGCTATGCCGCCGTTGGTGCCTGGCGAGGAGAAGTATTATTGCAATTGGGGCTTCTTTCCCATGGGTTTTGTCTTTGAGAGCTTGAAATCTAATGGAAATGATTTGCCGCCGCAACCGGTGCCGGTGGCGGTGGCGCCTGCGGAGGCGGGTGTTTCGGATAGTGGAGGTCCGCGGAAGCGAGGGAGGCCCCGGAGGGTGGTTTGA 822 0.5681 MQNNDNNSNKEEAERLIGIAEKLLQNRDLNGAKDFAILAQETEPLLETSDQILAIADVLLVSDSTTPDDTPQWYQILQVDVSHSQDLHVIRSNYRRLALLLHPDKNRFPFAHHAFALVSDAWTVLSDPAQKLAYDSGLNRVQGNVSGSVQQEKLPVRRGSDSSLGNFWTACPYCYLMYEYPRVYEGCCLRCQNDSCERSFHGAAVTAMPPLVPGEEKYYCNWGFFPMGFVFESLKSNGNDLPPQPVPVAVAPAEAGVSDSGGPRKRGRPRRVV 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc141g00009 273 Gene3D DnaJ domain 66 149 IPR036869 -
Stsc141g00009 273 SMART dnaj_3 71 130 IPR001623 -
Stsc141g00009 273 ProSiteProfiles dnaJ domain profile. 72 138 IPR001623 -
Stsc141g00009 273 MobiDBLite consensus disorder prediction 245 273 - -
Stsc141g00009 273 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 6 250 - -
Stsc141g00009 273 CDD DnaJ 73 127 IPR001623 -
Stsc141g00009 273 Pfam DnaJ domain 73 135 IPR001623 -
Stsc141g00009 273 SUPERFAMILY Chaperone J-domain 65 139 IPR036869 -
Stsc141g00009 273 PRINTS DnaJ domain signature 94 109 IPR001623 -
Stsc141g00009 273 PRINTS DnaJ domain signature 110 130 IPR001623 -
Stsc141g00009 273 PRINTS DnaJ domain signature 56 74 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc141g00009 Stsc-Chr141 55348 56590 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc141g00009 5 266 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 52.113 3.47e-91 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc141g00009 - - ahf:112706243 471.085