Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc141g00008 ATGTTTATCTATAAAGGGAAAATGCTTCCTTTCCTTTTTCCACATATCCATTCTCACATTCTCATCACTCAAGGAAGGGTTCTTGTTGAAAATCGATCGATGACTCGCACGAAGATAAAGATAAAGAAGATCGATAACATAACGGCAAGGCAGGTAACGTTCTCGAAGAGGAGGAGAGGGCTGTTCAAGAAGGCGAATGAGCTTTCTGTGCTTTGTGATGCTGATCTTGCTCTCATTGTTTTCTCTGCTACCGGCAAGCTCTTTCATTATGCCAGTTCCAGTATGGACGAGACAATTACAAGGTACAATAGGCACTTTAATGACATGAACAAATTGGAAAGACCTCAGAATCTGCAGAATATTGAGGATAGTAACACCAAGTTATTAAGTGAGGAAGTTGCAAAACGAACTCAGCAACTAAGGAGGATGGATGGTGAGGATCTCGAAGGACTAGACTTGAGGGATTTGCAGAACTTGGAGAAAACACTTGAAGCAGGACTCAGCCGTGTCATTCACATGAAGGACAAGCGGATTATGGGTGAGATTTCTCAACTTCAGAGTAAGGTTTGTTCAGTACTCGTTCATAGCTTCCTCATGATAATAATATACCAAGTTATTATTAATAATAATAATAATAATAATAATAATAATAATAATAATCAAATTGTTTCTCTGAGAATTGTAACCCTTTCTTCTTCTTCTTCTCATTGGCGCACGCGCATTACTGAACTTGGGAAACAATATTAA 747 0.3842 MFIYKGKMLPFLFPHIHSHILITQGRVLVENRSMTRTKIKIKKIDNITARQVTFSKRRRGLFKKANELSVLCDADLALIVFSATGKLFHYASSSMDETITRYNRHFNDMNKLERPQNLQNIEDSNTKLLSEEVAKRTQQLRRMDGEDLEGLDLRDLQNLEKTLEAGLSRVIHMKDKRIMGEISQLQSKVCSVLVHSFLMIIIYQVIINNNNNNNNNNNNNQIVSLRIVTLSSSSSHWRTRITELGKQY 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc141g00008 248 ProSitePatterns MADS-box domain signature. 36 90 IPR002100 GO:0003677|GO:0046983
Stsc141g00008 248 Gene3D - 46 117 IPR036879 GO:0003677|GO:0046983
Stsc141g00008 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 36 209 - -
Stsc141g00008 248 ProSiteProfiles MADS-box domain profile. 34 94 IPR002100 GO:0003677|GO:0046983
Stsc141g00008 248 Pfam K-box region 124 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc141g00008 248 ProSiteProfiles K-box domain profile. 119 211 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc141g00008 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 43 90 IPR002100 GO:0003677|GO:0046983
Stsc141g00008 248 PRINTS MADS domain signature 36 56 IPR002100 GO:0003677|GO:0046983
Stsc141g00008 248 PRINTS MADS domain signature 56 71 IPR002100 GO:0003677|GO:0046983
Stsc141g00008 248 PRINTS MADS domain signature 71 92 IPR002100 GO:0003677|GO:0046983
Stsc141g00008 248 CDD MADS_MEF2_like 45 105 IPR033896 GO:0000977|GO:0045944
Stsc141g00008 248 SUPERFAMILY SRF-like 35 108 IPR036879 GO:0003677|GO:0046983
Stsc141g00008 248 SMART madsneu2 34 93 IPR002100 GO:0003677|GO:0046983
Stsc141g00008 248 FunFam Transcription factor, MADS-box 46 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc141g00008 Stsc-Chr141 45990 51602 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc141g00008 34 188 MADS-box Gene Family AT2G22540 59.615 1.35e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc141g00008 K-box 1.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc141g00008 - - sspl:121775765 194.126