Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc141g00003 ATGGCTTCTTCTTCTTCTTCTTCTTCTTTTCTAATCATATTCACTTTTCTTCTACTTGCTAACCTCAACACAGTTGCATATGCAGCCGCTAATGAAACCAGAGAAACGCCGCCGCCGCCACCGACACCGCCGCCGCCGGATTCCGAAAAAACTTCATCCGCCTTCAAGCCAGGCATGGCGGTGGTAGTTGGCGTATTAACCACTATGTTCTCTCTTACCTTCCTCCTCCTCCTCTACATCAAGCACTGCAACGGCGGCGCCACCGACTCCACCGGAACTACGGGAACCGGCTATCATTACACCTCACGCGCGGCAACATTCGCCGGAAGGAAAAACTCCGGAATCGACCGTTCCGTAGTGGAATCGCTTCCAATCTTCAGATTCGGATCCCTCTGGGGACAAAAGGAAGGACTCGATTGCGCGGTTTGCCTCGCGAAATTCGAGTCCTCCGAAGTCCTCCGGCTCCTTCCGAAGTGCAAGCACGCGTTCCACGTGGAGTGCGTGGACACGTGGCTCGACGCGCACTCCACGTGTCCGTTGTGCCGGCACCGGGTGGATCCGGAGGACATTCTTCTGGTAGACAACAATGCCGCCGCACCGGTGCACAGTCAGAGCGAGAGCGAACCGTGTTCGGAGAGGTACGAAACACGGCGAGTCTCCGGAAGGCACTCGTCGGTTGGTGAGAAAGAAGGAGGGTTTTTAGAGATCATCATTGAGAACGAGAACGAAACACAACGACGAAACGCAGCGCCAGCGTCGTCGTTTAGAAGGTCTTTGGATAGTGCCACGTGTGAAACGACATCGAGATCGAATAATAACAACAACAATAATAACAAGAAGTGGTTAATGCGTTCAAGAAAAGACGGGATGTTGTTGGTGAAAACGACCACGCACCAAGAAGTGGAGAAAGAAAGGAGGAGCACCGGTGCGGAACGGAGGTTGGAGCACCGGATCATTGTCTCTCCTACCCCTAAACAATGCGGTTACGGTTATAACGGTTTGTTGCGAGGGCAGTTACAACGGTGGAGCGATGTTCAGCCGAGTGTGTCTGAGTTAACGGGGTTAAGCAGGTTTGTGAGGAACGGTAACGGTGGTGACGGTGGTAACAGGGAAGAGGAAGGAGGAGGAAGAGAAGAGGGGATGGTTACGAGGTGGTTGGGATGGATATCAAGAACGCAGACACAGCCAGCTGTACGGTAG 1200 0.5325 MASSSSSSSFLIIFTFLLLANLNTVAYAAANETRETPPPPPTPPPPDSEKTSSAFKPGMAVVVGVLTTMFSLTFLLLLYIKHCNGGATDSTGTTGTGYHYTSRAATFAGRKNSGIDRSVVESLPIFRFGSLWGQKEGLDCAVCLAKFESSEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRHRVDPEDILLVDNNAAAPVHSQSESEPCSERYETRRVSGRHSSVGEKEGGFLEIIIENENETQRRNAAPASSFRRSLDSATCETTSRSNNNNNNNNKKWLMRSRKDGMLLVKTTTHQEVEKERRSTGAERRLEHRIIVSPTPKQCGYGYNGLLRGQLQRWSDVQPSVSELTGLSRFVRNGNGGDGGNREEEGGGREEGMVTRWLGWISRTQTQPAVR 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc141g00003 399 MobiDBLite consensus disorder prediction 359 378 - -
Stsc141g00003 399 MobiDBLite consensus disorder prediction 244 281 - -
Stsc141g00003 399 FunFam RING-H2 finger protein ATL43 115 189 - -
Stsc141g00003 399 SMART ring_2 140 181 IPR001841 -
Stsc141g00003 399 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Stsc141g00003 399 MobiDBLite consensus disorder prediction 208 226 - -
Stsc141g00003 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 189 IPR013083 -
Stsc141g00003 399 MobiDBLite consensus disorder prediction 34 50 - -
Stsc141g00003 399 MobiDBLite consensus disorder prediction 202 226 - -
Stsc141g00003 399 Pfam Ring finger domain 139 182 IPR001841 -
Stsc141g00003 399 MobiDBLite consensus disorder prediction 31 53 - -
Stsc141g00003 399 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 393 - -
Stsc141g00003 399 MobiDBLite consensus disorder prediction 244 280 - -
Stsc141g00003 399 CDD RING-H2_EL5-like 139 182 - -
Stsc141g00003 399 SUPERFAMILY RING/U-box 133 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc141g00003 Stsc-Chr141 14820 16118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc141g00003 52 398 C3H Transcription Factor Family AT5G05810 41.878 2.27e-67 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc141g00003 K19041 - rvl:131319505 285.034