Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1419g00003 ATGAACTTTGTTGATGAGAAGAAGAAGAAGAATAATGGAGTGAGATTGCCACCTGGTTTTCGGTTCCAACCAACAGAAGAAGAGCTTCTATTTCAGTATTTGAAGTGCAAGGTTTTCTCTTTTCACTTGCCAGCTTCAATCATTCCTCACATCAATGTATGCAACTATGATCCTTGGGATTTGCCAGGGAATAATAATTGTGATGAAGAAGATAGATACTTGTTCAGCTCAAAGGAAGTGAAGTATAAAAATGGTAACCGAATGAAGAGAACAACCAAATCTGGATATTGGAAAGCAACTGGATCAGACAAAAGAATAGTGTCAACATCATTATGCAATAATAATATTGTTGGGATAAGAAAAACTCTTGTATTCTATCATGGAAAATCTCCAAGTGCTTCTAGAACTCATTGGATCATGCATGAATATCGTCTCGTCACTACTCTTTCCCATTCTTCATCATCATCACCTCAGTATGTAGAAGAGTTAGGGGATTGGGTTCTTTGCCGCATATTCATGAAGAATAATAAAAGAAGCATAGAAAGCCATCATCATCACATGGTGAAGAAAATTAATAATAATAATGTAGTGATGATGAAAAATAATAATAATGTTGTGGAGGTGGCTAATAATAATAAGCCAATATTATTCTTTGATTTTATGAGGGTACATAACTCACCAATATCTTCATCCAATCCAATCATCCATTTTTCTTCTAAATCAGCATCATCATCATCTTCTTGTTCAAGTTCTAGTTTCATAACTGAGGTGTCTTCATCAGATAACAATGATGAAGGAAAATGTAGTTATTATGTATGA 819 0.3419 MNFVDEKKKKNNGVRLPPGFRFQPTEEELLFQYLKCKVFSFHLPASIIPHINVCNYDPWDLPGNNNCDEEDRYLFSSKEVKYKNGNRMKRTTKSGYWKATGSDKRIVSTSLCNNNIVGIRKTLVFYHGKSPSASRTHWIMHEYRLVTTLSHSSSSSPQYVEELGDWVLCRIFMKNNKRSIESHHHHMVKKINNNNVVMMKNNNNVVEVANNNKPILFFDFMRVHNSPISSSNPIIHFSSKSASSSSSCSSSSFITEVSSSDNNDEGKCSYYV 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1419g00003 272 ProSiteProfiles NAC domain profile. 16 174 IPR003441 GO:0003677|GO:0006355
Stsc1419g00003 272 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 238 - -
Stsc1419g00003 272 Gene3D NAC domain 25 180 IPR036093 GO:0003677|GO:0006355
Stsc1419g00003 272 SUPERFAMILY NAC domain 13 174 IPR036093 GO:0003677|GO:0006355
Stsc1419g00003 272 Pfam No apical meristem (NAM) protein 17 145 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1419g00003 Stsc-Chr1419 13059 15458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1419g00003 10 222 NAC Transcription Factor Family AT5G13180 50.463 4.91e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc1419g00003 NAM 6.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1419g00003 - - aprc:113868555 264.618