Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1414g00003 ATGGATTGCATGAGCAAGAATTGGAAATATGATGTGTTTGTCAGTTTCAGAGGCGAGACTCGCTTTAACTTCACTGATCATCTTTTTGCTGCTCTCCACAGGCACGCCATACTTGCCTTCAGGGATGATACTAAGCTTGATAAAGGAGAAGTTATATCAGAAGGGCTTATGCAAGCTATTGAAGGATCACAGGTTTTCATTGTGGTCTTCTCAATGGATTATGCTTCCTCCACATGGTGCTTACGAGAATTGGCAAAAATAGCCGATTGCAGTCAAGTAACGGGACAGCATGTTCTGCCTATTTTCTATGATGTGAGTCCAGCTGTGGTGAGATGGCAAACTGGAAATTATGAAAAAGCCTTTCTGAAACATGAAGAAAGATACAAAGATGATGCAGAGATGATGGAGCAAGTGCTAAGATGGAGGGGAGCTCTAACACAAGTAGCCAATCTCTCTGGCTGGGATGTGAATGATAAGTCACAATCTTCTGAGATTGAAAAAATTGTCAGAAAGGTAACAAACATATTGAGTCCCAAACTATCATCATCAAGTCTATCTAATGATATAGTAGGGATGCACTCCCCTTTAGAAGAATTAGAAAAGTTTCTAGTTTTGGACTCAGGCGATGATGTTCGAGTTGTAGGGATTTGTGGAATGGGTGGCATAGGAAAGTCAACTCTTGCCACTCTTTTATATAAAAAAATCTCTCATCAATATGATGTTTCATGTTTCGTGGATGATGTAAGTAAAATCTACGGAGATTCTGGTCCACTTGGTATACAAAAGCAACTTCTTTGTCAAGCTTTCATGGAAGAAGAATCTAGAAAATGCAATCTTTTGCAGGCAAATAACCTGATTCAAAATAGGTTATGCCATCGAAAGGTATTCATAGTTCTGGATAATGTTGACAACGGGATTCAGTTGGAGAAGTTGGCTCTAAAACGGGAATGGGTAGGTAGAGGGAGTAGAATAATCATAGTTTCTAGAGATGAACATATTTTGAGAGAGTATGGAGTAGATGGTGTTTGCAAAGTTCAACTCTTAAATCATGAGAATTCTCGCCAATTGTTCTGCAGAAAAGCTTTCAAAAGTAATCATGTTGCAAAAGGTTATGAAAGCCTGACAAATTCTGCATTAACATATGCTAATGGACTTCCCTTAGCAATAAGAGTACTGGGATCATTTTTGTATGGGCGAGAAGTCTGTGAGTGGAGTAGTGCACTGGTTAGACTGAAAGAATATCCAACGAAATATTTCTTGATATTGCATGTTTTTTCCCCGATGAGGATGAAGATTATATAA 1302 0.3871 MDCMSKNWKYDVFVSFRGETRFNFTDHLFAALHRHAILAFRDDTKLDKGEVISEGLMQAIEGSQVFIVVFSMDYASSTWCLRELAKIADCSQVTGQHVLPIFYDVSPAVVRWQTGNYEKAFLKHEERYKDDAEMMEQVLRWRGALTQVANLSGWDVNDKSQSSEIEKIVRKVTNILSPKLSSSSLSNDIVGMHSPLEELEKFLVLDSGDDVRVVGICGMGGIGKSTLATLLYKKISHQYDVSCFVDDVSKIYGDSGPLGIQKQLLCQAFMEEESRKCNLLQANNLIQNRLCHRKVFIVLDNVDNGIQLEKLALKREWVGRGSRIIIVSRDEHILREYGVDGVCKVQLLNHENSRQLFCRKAFKSNHVAKGYESLTNSALTYANGLPLAIRVLGSFLYGREVCEWSSALVRLKEYPTKYFLILHVFSPMRMKII 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1414g00003 433 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 413 IPR044974 GO:0006952
Stsc1414g00003 433 Pfam NB-ARC domain 196 412 IPR002182 GO:0043531
Stsc1414g00003 433 ProSiteProfiles TIR domain profile. 8 176 IPR000157 GO:0007165
Stsc1414g00003 433 Gene3D - 156 340 IPR027417 -
Stsc1414g00003 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 417 IPR027417 -
Stsc1414g00003 433 SMART till_3 9 151 IPR000157 GO:0007165
Stsc1414g00003 433 Gene3D - 347 424 IPR042197 -
Stsc1414g00003 433 Pfam TIR domain 9 188 IPR000157 GO:0007165
Stsc1414g00003 433 PRINTS Disease resistance protein signature 382 396 - -
Stsc1414g00003 433 PRINTS Disease resistance protein signature 289 303 - -
Stsc1414g00003 433 PRINTS Disease resistance protein signature 213 228 - -
Stsc1414g00003 433 FunFam Disease resistance protein (TIR-NBS-LRR class) 6 178 - -
Stsc1414g00003 433 Gene3D - 2 147 IPR035897 -
Stsc1414g00003 433 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 154 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1414g00003 Stsc-Chr1414 6661 8125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1414g00003 4 395 WRKY Transcription Factor Family AT4G12020 26.076 1.14e-31 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1414g00003 - - adu:107476580 652.129