Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc140g00012 ATGGAAGGTGAAAGAAAACTCCTTGCTCCACCAAATGGGGTAGTTGATGGTGTTCAGAAAATTAGAGCACTGCACGGGAGGACGACTGGCCCTACAAGGCGTTCTACAAAAGGGCAATGGACAGCCGAAGAGGATGAGATTTTGCGTAAAGCTGTTCAGCGTTTTAAAGGAAAGAATTGGAAGAAAATAGCTGAGTGTTTCAAGGATAGAACTGATGTCCAGTGCCTGCATAGATGGCAGAAAGTCCTAAATCCCGAACTTGTCAAAGGTCCTTGGTCTAAAGAGGAAGATGAAGTAATTATTGAATTAGTGAACCAATATGGGCCTAAAAAGTGGTCTACTATTGCTCAGCATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTTCAATAAACAAGGAAGCATGGACACAGGAAGAGGAGCTGGCTCTGATACGTGCTCATCAAATTTATGGGAACAAATGGGCAGAACTAACCAAGTTCTTACCTGGAAGGACAGACAATAATATAAAAAATCACTGGAACAGTTCTGTAAAAAAGAAATTGGACTCTTACTTGGCGTCAGGCTTGATTACTCCGTTAGAAAATGTTCCACTTGTTGGAAATCCCAATCAACCCATGGCCTCAGCCTCTTCAAGGTTGCAGTCTAGTGGAGAAGAAGCTGGTCATAGGGGAACTGAAGGAGAGGAAGGAGAGGAAGTTTCACAATGTAGCCAAGAGTCGGCTAATGCTGGACACTTTCAATCTGCCAAAGAGATGAGCATTGTTGTTTTTCAACCTGGAGAGGAATACAGAGGAAACGAAGAATATGGTCTTGGAAAGGGGTATGGTCCTAGTCAGCCGTCTTGTTCAGAGCCATATTATGTTTCTCTGGACGACATCACTATATCTTTCCCGGAGATGCCTTGCCAAGAGACTTCCTCCTCTCACTTCATTGAGCAAAATTACTCACAAGAACCTGGAAATTCTGCTGCCGGGGATTGCCAGCATAATTTGCTTTCCTTACCCAATATTTCCTCACTGGATTTTGTGCAGGAATCCACACATTTACAAAATGAGTGTATAGTTCATGCTCCCAGTGAAGGCCATGACCTGGCCATTGTTCCATTTCAGACTTCTGCAGGGCTAGATCTTTCGACATCCATGACACCTACTGCTATGGACTCGCTACGAGAGAACATGTTGATATCTGATGATGAATGTTGCAGAGTTTTATTTTCAGAGGCAATAAGTGAGGGCGGCCTTTCTTCTGCAGATTATAATAAAGGTGTAAATATGGTTGACGTGTCTGGATGCACTTCCGTTCTTTGCCAGTCGTCTTTACCATCTGCCTCGGTACCTACGGCAGATGATGGTAGGCTGCAGTATTCTTCAGAAGCCAAACAGTTGTTTCAGCCTGAGGATCAGCAGTTTGTCTCCAGATCACATGATGTTTATTCTAATGACTTAGCCAGTTCTACTCCTATTTATGGGATAAGCAGTGCAGAGATGCAAGAGGAATCTGATATAGTGACAGATACTTCAAAATTGATCCCTGTAAATAGTTTTGGCTGTGGACCAGATACTAAGAAAACTGACCATTCTATCAGAGAAAAGCCGAATGTGCATGCAGAACAGGAAGACACTGGAGCTTTATGTTATGAACCTCCTCGTTTTCCGAGCTTGGATATGCCTTTCTTCAGCTGTGATCTTGCACAATCGGGCAGCGATATGCAGCAAGAATATAGTCCCCTTGGTATTCGCCAGTTCATGATGTCCTCTATGAACTGTCTGACTCCCTTTAGGTTGTGGGACTCGCCTTCTCGTGATAAAAGCCCAGATGCATTGTTGAAAAGTGCTGCTAAAACTTTCACGGGTACACCATCAATATTAAAGAAACGACACCGTGATTTTTTGTCTCCTCTATCAGATAAGAGAGTTGACAAGAAACTTGAGACATCCAACTTGATAAAAAACTTTTCCCGTCTGGATGTCATGTTTGATGACTGTGAGACTCAGAAAGCAGATCCACTTTCTTCATCTCCATTGAATAAAATGAACACTGGTACCTCTTGTGGTGATGATAAAGAAAATCCTGAACAATCTTCTGAAATGGAACAAGTAACTGAGAAAAATGGACAATCAATGTTGGGCGACAGTAAGTCAGTAAAAGATAAAGATACCACTGATTCTCTGGATAAGACTGAGCAACAACCTCTTGATGTTGATTCTAAGATGAAAGATGATGTTGACAATACTGTTGAGGTGCAACAACGTTCTGGAGTCTTGGTTGAACGTGATCTGAATAACCTACTATTGAATTCTCCTAATCAAGTTGGTGTGAAATCAGACATAGTATTAAGTGCTAGAACAAATAAACATTCATGCTCGAGTTTTAACTCTCCTTGTATTCATGTAAAGGAGAATGAAAGAGTTTCAATTGCTGTTACCTGTGTACAGTCTGTTTGTTCAACGGCCACTGTAGAAAATTTGGGTGATCAAACAGGAAATGATGGAGGCTTTGAAACTTGCAGCATATTTGGTGAAACACCTTTTAGGAGAAGCCTTGAATCACCTTCGGCATGGAAATCTCCTTGGAAATCTCCTTGGTTCATAAACACATTTCTTTCTAGCCCCAGGATTGATACTGAAATTACAATTGAGGATTTTGGGATATTCATGAGCCCGTGTGATAGAAGCTATGATGCAATTGGGTTGATGAAACAGGTTAGCGAACAAACTGCTGCTCAGTATGCCAATGCTCATGAGATATTGGAAAATGAAACTCCTAAGGCGTTACCAAAAGATGCATCTGGAAACAACAGGGATGAGAACAAGGAAAACGATGATCCACAGAAACAGCCTGGGAATCATTCTCAATTAACTTCAAAAGCAATGGTGGAGCGACGCGTACTTGACTTCAGCGAATGTGGATCACCAGGCAAGGGTGAGAGCAGCAAATCATCAACCATGAACTTCGAAAGTCCATCTTCATATTTGAAGGATTGTAGATAG 3018 0.4192 MEGERKLLAPPNGVVDGVQKIRALHGRTTGPTRRSTKGQWTAEEDEILRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEVIIELVNQYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQEEELALIRAHQIYGNKWAELTKFLPGRTDNNIKNHWNSSVKKKLDSYLASGLITPLENVPLVGNPNQPMASASSRLQSSGEEAGHRGTEGEEGEEVSQCSQESANAGHFQSAKEMSIVVFQPGEEYRGNEEYGLGKGYGPSQPSCSEPYYVSLDDITISFPEMPCQETSSSHFIEQNYSQEPGNSAAGDCQHNLLSLPNISSLDFVQESTHLQNECIVHAPSEGHDLAIVPFQTSAGLDLSTSMTPTAMDSLRENMLISDDECCRVLFSEAISEGGLSSADYNKGVNMVDVSGCTSVLCQSSLPSASVPTADDGRLQYSSEAKQLFQPEDQQFVSRSHDVYSNDLASSTPIYGISSAEMQEESDIVTDTSKLIPVNSFGCGPDTKKTDHSIREKPNVHAEQEDTGALCYEPPRFPSLDMPFFSCDLAQSGSDMQQEYSPLGIRQFMMSSMNCLTPFRLWDSPSRDKSPDALLKSAAKTFTGTPSILKKRHRDFLSPLSDKRVDKKLETSNLIKNFSRLDVMFDDCETQKADPLSSSPLNKMNTGTSCGDDKENPEQSSEMEQVTEKNGQSMLGDSKSVKDKDTTDSLDKTEQQPLDVDSKMKDDVDNTVEVQQRSGVLVERDLNNLLLNSPNQVGVKSDIVLSARTNKHSCSSFNSPCIHVKENERVSIAVTCVQSVCSTATVENLGDQTGNDGGFETCSIFGETPFRRSLESPSAWKSPWKSPWFINTFLSSPRIDTEITIEDFGIFMSPCDRSYDAIGLMKQVSEQTAAQYANAHEILENETPKALPKDASGNNRDENKENDDPQKQPGNHSQLTSKAMVERRVLDFSECGSPGKGESSKSSTMNFESPSSYLKDCR 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc140g00012 1005 CDD SANT 91 135 IPR001005 -
Stsc140g00012 1005 MobiDBLite consensus disorder prediction 209 227 - -
Stsc140g00012 1005 SMART sant 36 85 IPR001005 -
Stsc140g00012 1005 SMART sant 88 137 IPR001005 -
Stsc140g00012 1005 SMART sant 140 188 IPR001005 -
Stsc140g00012 1005 MobiDBLite consensus disorder prediction 982 998 - -
Stsc140g00012 1005 Gene3D - 36 88 - -
Stsc140g00012 1005 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Stsc140g00012 1005 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 83 IPR017930 -
Stsc140g00012 1005 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 139 IPR017930 -
Stsc140g00012 1005 MobiDBLite consensus disorder prediction 706 720 - -
Stsc140g00012 1005 MobiDBLite consensus disorder prediction 675 697 - -
Stsc140g00012 1005 ProSiteProfiles Myb-like domain profile. 32 83 IPR001005 -
Stsc140g00012 1005 Pfam Myb-like DNA-binding domain 141 183 IPR001005 -
Stsc140g00012 1005 Pfam Myb-like DNA-binding domain 89 135 IPR001005 -
Stsc140g00012 1005 Pfam Myb-like DNA-binding domain 37 83 IPR001005 -
Stsc140g00012 1005 FunFam Transcriptional activator Myb isoform A 89 141 - -
Stsc140g00012 1005 SUPERFAMILY Homeodomain-like 33 89 IPR009057 -
Stsc140g00012 1005 PANTHER MYB PROTEIN-RELATED 37 110 - -
Stsc140g00012 1005 MobiDBLite consensus disorder prediction 926 1005 - -
Stsc140g00012 1005 Gene3D - 142 198 - -
Stsc140g00012 1005 MobiDBLite consensus disorder prediction 531 546 - -
Stsc140g00012 1005 MobiDBLite consensus disorder prediction 209 254 - -
Stsc140g00012 1005 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 190 IPR017930 -
Stsc140g00012 1005 MobiDBLite consensus disorder prediction 938 954 - -
Stsc140g00012 1005 FunFam Transcription factor MYB3R-2 142 204 - -
Stsc140g00012 1005 MobiDBLite consensus disorder prediction 529 549 - -
Stsc140g00012 1005 CDD SANT 40 83 IPR001005 -
Stsc140g00012 1005 FunFam Transcriptional activator Myb isoform A 36 88 - -
Stsc140g00012 1005 Gene3D - 89 140 - -
Stsc140g00012 1005 ProSiteProfiles Myb-like domain profile. 84 135 IPR001005 -
Stsc140g00012 1005 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Stsc140g00012 1005 CDD SANT 143 183 IPR001005 -
Stsc140g00012 1005 MobiDBLite consensus disorder prediction 721 743 - -
Stsc140g00012 1005 Coils Coil 909 929 - -
Stsc140g00012 1005 MobiDBLite consensus disorder prediction 674 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc140g00012 Stsc-Chr140 70953 75769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc140g00012 4 1005 MYB Transcription Factor Family AT4G32730 43.556 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc140g00012 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc140g00012 - K09420 gmx:100811335 1360.51