LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc140g00004	ATGTTTTCAGTTGCGCCCTTGTCTCCGGCCACTTCACCGGCAATGGCTCCACCGTCACCGCCGCTCTTTGACATTGCTCCTCCGCCATTCCAGCTCGAACCTACAACAGCGCCACCACCATTTCCTTCTCCGCCATCACCGCCGTTATTAGTTCTTCCAATGCCTTCAACACCACCGCTTACCTTGCCGCCGGTCTCTTTGCCTACGAACTCACCGCCTCCGGTTACTCAAATCCCGCCGGCGATTTCCTCGTCGCCGCCTCTGCCGGAAATTCCGCTCGTTCCTGCTTCACCGTCGCCGCCTCCGATTACATCGAACGAGAATCCGACTCCAGCAACGCCGTCTTCTCCGAATACGCCATTGCCGGCGACTGCATCTCCTCCGATCCCGGCGGCGCCGTTTCCTTTGTCTCCGCCAACTCTGGTTCCGCCGTCGGTGACTTTTCCGTCAACCTTGCCACCGCCATTGCCGTCGCGTAACCGGAAAGTTTCGCCGGAGGTTCCAGTTCCGACAGCCACTTCGCCACCGTCACCACCGTCACCGGAATTTTGGCCTCTAGCTCCGGAAGCAGCAGCCTCTCCGGCGACCGTTTACCCTTTCACGGGACCTACATTGCCATCAAGTCCAGAATCAACGCGGGCATCGCCGCCGTCAAGTCGAAGCTTGCCGCTTGCGGTGGACATTGATAAGCAGTCAGGGTTCGAATTGCCAAGTGGATTCATTGTTGGAGGAATTGTAATTGGTGGCATCGTTATTGGGTTTCTTGTAGCACTTGTGTTACTTTTGTTCAAGAATAGAAAGAAGCAGCATAAGAAGAATCTGCAGATACATCAATCTGAGAAATCATCACCCTCTGTTGGATCTAAGACATCAGGTTCTCATGTCATTAAAGTGCTGCCAAATCCACCAAATCTAATAGAGGGTGGTGGAGATTTAGGGTCTATGAATGCCCCGGAAGTGACTGCAATTCCAAACCATGCTACTGAAAGCATTGCCTTTGGTTCTATGAATGGCGGTTTCACATATGATGAGATAGTAGCAGCAACTAATGGTTTCTCTGAAGCCAACCTTCTCGGGGAAGGTGGATTTGGGTATGTATATAAAGGAGTTCTTACGAATGGAAAGGAAATTGCAGTTAAGCAGTTGAAATCAGGAAGCCAGCAAGGGGAGCGAGAGTTTCAGGCCGAGGTCGAGACCATTAGCCGGGTGCATCATAAGCATCTTGTTGAGTTGGTTGGATACTGCGTTACCATGTCAGAAAGAATGCTTGTTTACGAATTTGTTCCAAATAACACATTGGAATTCCATTTACATGGGGAAGGGAAGCCTGTTGTTGAGTGGGAGAAAAGAATTAAGATTGCCCTGGGATCTGCGAAAGGGCTCGCATATCTGCATGAAGATTGTAATCCAGCCATCATTCACCGTGATATTAAAGCATCTAATATTCTTCTGGACTTCAATTTTGAAGCAAAGGTTTCTGACTTTGGCCTAGCAAAGATCTTTCCCAACGCTGATGGCTGCATCACTCACCTCACCACCCGAGTGATGGGAACTTTTGGGTATCTGGCTCCAGAATATGCATCAAGTGGTAAACTAACAGATAAATCAGATGTATATTCTTATGGAGTGATGCTTTTAGAACTTATAACTGGACGTCCAGCGATCACTACAGAAGGATCAAGAAACGTGAGCTTGGTTGATTGGGCTAGGCCCTTGCTTGCTCAAGTGCTAGAAGATAGTGACTTCAAGGATCTTGTCGATCCAAGGTTGCAGAATAATTATGGAGCTGATGAGATGACTAGAATGATTACCTGTGCAGCCGCCTGTGTGCGCCATTCAGCCAGGCTTCGACCCCGTATGAGCCAAATAGCAGGTGCCTTAGAAGGATTGGTTTCTATTTCGGATCTTGTAGGCGATATTACACCGGGGCATGCCCGAATATACAGTTGGCCGGAGAGTTCAACTTATGATGTCTGCTACGAACAGGACTTGAGAGACTTCAATTTGGCATTATCATCTCAAACTCAAAGTGTGCAAAGTGAAATGACTAGTGCTTATGGTCTTTACCTATCTGACTCAAGTAGTGAAGGTCAATAA	2097	0.4864	MFSVAPLSPATSPAMAPPSPPLFDIAPPPFQLEPTTAPPPFPSPPSPPLLVLPMPSTPPLTLPPVSLPTNSPPPVTQIPPAISSSPPLPEIPLVPASPSPPPITSNENPTPATPSSPNTPLPATASPPIPAAPFPLSPPTLVPPSVTFPSTLPPPLPSRNRKVSPEVPVPTATSPPSPPSPEFWPLAPEAAASPATVYPFTGPTLPSSPESTRASPPSSRSLPLAVDIDKQSGFELPSGFIVGGIVIGGIVIGFLVALVLLLFKNRKKQHKKNLQIHQSEKSSPSVGSKTSGSHVIKVLPNPPNLIEGGGDLGSMNAPEVTAIPNHATESIAFGSMNGGFTYDEIVAATNGFSEANLLGEGGFGYVYKGVLTNGKEIAVKQLKSGSQQGEREFQAEVETISRVHHKHLVELVGYCVTMSERMLVYEFVPNNTLEFHLHGEGKPVVEWEKRIKIALGSAKGLAYLHEDCNPAIIHRDIKASNILLDFNFEAKVSDFGLAKIFPNADGCITHLTTRVMGTFGYLAPEYASSGKLTDKSDVYSYGVMLLELITGRPAITTEGSRNVSLVDWARPLLAQVLEDSDFKDLVDPRLQNNYGADEMTRMITCAAACVRHSARLRPRMSQIAGALEGLVSISDLVGDITPGHARIYSWPESSTYDVCYEQDLRDFNLALSSQTQSVQSEMTSAYGLYLSDSSSEGQ	698

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc140g00004	698	Gene3D	Transferase(Phosphotransferase) domain 1	428	636	-	-
	Stsc140g00004	698	ProSiteProfiles	Protein kinase domain profile.	352	631	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc140g00004	698	Gene3D	Phosphorylase Kinase; domain 1	317	427	-	-
	Stsc140g00004	698	MobiDBLite	consensus disorder prediction	200	219	-	-
	Stsc140g00004	698	SMART	serkin_6	352	603	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc140g00004	698	Pfam	Protein kinase domain	353	601	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc140g00004	698	SUPERFAMILY	Protein kinase-like (PK-like)	335	627	IPR011009	-
	Stsc140g00004	698	MobiDBLite	consensus disorder prediction	11	161	-	-
	Stsc140g00004	698	FunFam	Proline-rich receptor-like protein kinase PERK8	324	427	-	-
	Stsc140g00004	698	CDD	STKc_IRAK	358	630	-	-
	Stsc140g00004	698	MobiDBLite	consensus disorder prediction	169	185	-	-
	Stsc140g00004	698	ProSitePatterns	Protein kinases ATP-binding region signature.	358	380	IPR017441	GO:0005524
	Stsc140g00004	698	MobiDBLite	consensus disorder prediction	272	293	-	-
	Stsc140g00004	698	MobiDBLite	consensus disorder prediction	1	222	-	-
	Stsc140g00004	698	FunFam	proline-rich receptor-like protein kinase PERK8	428	642	-	-
	Stsc140g00004	698	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	472	484	IPR008271	GO:0004672\|GO:0006468
	Stsc140g00004	698	MobiDBLite	consensus disorder prediction	278	293	-	-
	Stsc140g00004	698	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	252	652	IPR047117	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc140g00004	Stsc-Chr140	6296	10294	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc140g00004	220	698	Trihelix Transcription Factor Family	AT4G32710	51.534	1.62e-142	432

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Stsc140g00004		Pkinase	6.6e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc140g00004	-		-	adu:107470979	833.943