Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1404g00002 ATGGAGTCAGAGCGAGACAAATACAGCATGATAAATTTTGAGGAGACCGAGTTGCGACTCGGTCTGCCAGGTGGGTCGAACGACGGCGAGTTATCACTGAGGAACACTTGTACTACTACAGCAACTGGAAAGAGGGGTTTCTCGGAGACTACTGCTGCGACTAACGTGGATTTGAAGTTGAATCTGAATCTTGCATCCTCTTCTTGTTCCTCTTCTCTTAATAATAATAATGACTCCGTTTCAATTTCGTCTGTCAACGCTGACAGCAAGAACAAGGAGAAGAATGGTAGTGCTTCTACTCCAACTTCTACACCTCCTGTTACTCGTTCTAACGACCCGGCGAAACCACCTGCCAAGGCACAAGTGGTAGGTTGGCCACCAGTTAGATCCTTCAGGAAGAACATAGTGAGCAGCGGCCAAAAGAGCAACAAAGAAGAAACAGAAAAGGTGGCCGTCACCGCCGCCACCACCAGCACGGCGGTTGCTCCAAGCGCAGCAGCTACAAGCGGCACCAGCGGAGGGGCATACGTGAAAGTGAGCGTGGAGGGAGCACCATACCTTCGAAAAGTGGACCTGAAGCAGTACAAGAGCTACAGAGAGCTGTCAGATGCGCTGGCAAAGATGTTTAGTGCCACCATCATAGACTCTGCTGGCAGTGGGGCCCAATCCCAAGCCCAACACGATGGCAAAGGAAATGGCCTCTTCACCTTCAATGGATCTGACTATGTCCCCACTTATGAAGACAAAGACGGTGATTGGATGCTCGTTGGTGACGTGCCTTGGGAAATGTTCGTTGAATCATGCAAGCGCCTTCGCATAGTGAAAGGTTCCGAGGCAATTGGGCTAGGAGTTACTCCAAGAGCAGCAGCAGCGGAAGAGAAGTGCAAGATCAGAAGCTGA 900 0.5056 MESERDKYSMINFEETELRLGLPGGSNDGELSLRNTCTTTATGKRGFSETTAATNVDLKLNLNLASSSCSSSLNNNNDSVSISSVNADSKNKEKNGSASTPTSTPPVTRSNDPAKPPAKAQVVGWPPVRSFRKNIVSSGQKSNKEETEKVAVTAATTSTAVAPSAAATSGTSGGAYVKVSVEGAPYLRKVDLKQYKSYRELSDALAKMFSATIIDSAGSGAQSQAQHDGKGNGLFTFNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIVKGSEAIGLGVTPRAAAAEEKCKIRS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1404g00002 299 Gene3D - 169 288 - -
Stsc1404g00002 299 ProSiteProfiles PB1 domain profile. 174 276 IPR000270 GO:0005515
Stsc1404g00002 299 FunFam Auxin-responsive protein 169 286 - -
Stsc1404g00002 299 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 281 IPR003311 GO:0005634|GO:0006355
Stsc1404g00002 299 MobiDBLite consensus disorder prediction 68 126 - -
Stsc1404g00002 299 MobiDBLite consensus disorder prediction 68 109 - -
Stsc1404g00002 299 Pfam AUX/IAA family 15 283 IPR033389 -
Stsc1404g00002 299 SUPERFAMILY CAD & PB1 domains 168 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1404g00002 Stsc-Chr1404 10410 14516 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1404g00002 176 279 B3 DNA Binding Superfamily AT5G20730 30.769 8.36e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc1404g00002 AUX_IAA 1.4e-75 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1404g00002 K14484 - cave:132171332 257.299