Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc13g00037 ATGGCTATCCCCGACGACCCTTCTTCCAACCTAACGCCATCTTCATTCTCTGATTCTTCTAACTTTTCTCCACCCGATGACGACACACAATCTCCGCCATCCCCTCATGGCCACGGCGACCACGACGACAATTCCTCCCATAAAGCCAAGAAAAATAAGTCCCATGATTCAAACTCATCGCCTCATCCATCACCTAAACCGCCCAAGTCTCCAAAGGCCCCTTCTAAACCACCAAAACACTCTCCTCATCCAAAGGCCCCACCTCCGTCTCTACCGCCGCCGCCTCCGTCACCGCCGCCGCCGCCGCCACCGCCACCGCGTGCTATACCTCCTCCAAGCCCAACTTTAATAACGCCACCACCACCTTCACATTTAACTCCACCTCAAGTTATTCCTCCTTCTCATCCTCCTCCTCCTCCTCCTCCACCGCTGCCTCCAAACCGTCCCACTACGCCGCCACAATCACCTCCTCCGCCTTCAAGATCAGGCGGTGGTTCATCTTCGAAACGGCATTTTCCGCCGCCGGCGTGGTCAAGTTCGCATTCACGAGTCTATATAGAGCAACATGTTGGTTTCGCAGTGGCTGCAATTTCCCTCATTTCCGTCGTTGCCTTTTTTATCTTCTATGTTTTGAGGAAAAGGAAAGATCGAGATCGAGATTTTCAGTACTACGTCGACAAAACCAATAATGGAGCACAAGGAGGAATGTACGGTTCACAAAGATCCCAATTTACACCGGTAGGGGGGAGCGGAGGGTACGGAAGTAGTGGTAGCAACAAAAGAGGAGGCGGTGTTGGGATGATGTACCATTTAAGATCACCTTCCCAAATTAGCGGGGGTCCAATGTTTTATAGCTACGAACAAATCGTGGGAGTAACGAAGGGGTTTTCGAGTGAGAACGTAATAGGCGAAGGTGGGTTCGGGTATGTTTACAAGGCGTTGATGCCAGATGGTAGAGTAGGAGCAGTGAAGATGCTGAAATCCGGTAGTGGGCAAGGAGACAGAGAGTTTAGTGCTGAGATTGAGATTATTAGTAGGGTTCATCATCGTCATTTGGTTTCTCTCATTGGTTATTGCATTGCTCAGCACCATAGAGTGCTTGTCTATGAGTTCGTTCCTAATGGGAATCTCAGTCAGCACTTGCATGGAAATAACTTTCCTGTTTTGGATTGGGCGAATAGGATGAAGATAGCAAATGGCGCTGCAAAGGGCCTAGCGTATCTGCATGAGGGCTGCAACCCAAGGATTATTCATAGAGATATTAAGTCGGCAAACATACTTTTGGACAATGCTTACGAAGCACGGGTAGCAGACTTTGGACTAGCCAGACTAACGGATGACGCTAACACCCATGTATCAACTAGAGTGATGGGCACCTTCGGATACATGGCTCCAGAGTATGCAACAAGTGGGAAATTAACGGATAGATCAGACGTATTCTCATTTGGAGTTGTCCTGCTTGAGCTCATAACAGGAAGGAAGCCTGTTGATCCAACGCAGCCCATCGGACACGAGAGTTTGGTTGAGTGGGCTCGTCCACATCTTCTTGAAGCAATGGGGACGCGTGAGGTTGGTGATCTAGTAGACCCGAGGCTTCAAGGACGCTATGTTCATACTGAGATGTTTACCATGATTGAGGCTGCTGCCGCCTGTGTTCGTCATTCTGCTCCTAATCGCCCCCGTATGGTTCAGTTCTTCCTCCTCCTCATTATCACCACTCACAACTCCAAAACCACCACTACCATCACAACTCCCAACCGCAGACTCATTTCACCAACATTTATAGTAAAAGTGGAATTTTGCCACTTCGCCGGAATCAACCATATTGAAAATTCAACCACAACTTTTCTATGGCATTGTCTTCTCCCTCTCTCTTCGAAGCCATCCCTCTTCCCTTTTCCTCGGCGACAGTGGCGTGGTGGCGACTGCGACGTGATGTTCAACGACGCCAAGACTCGCGGTGACAGAGCAGAAATTTTGAGACAGCGGCTGCTTTACCAAACGACAACGAAGCAACTCGGCGGCAGTTGCAGTGGGTCCCTCTTCTTCCTCGACGGCGGAGCAGAACTCGGTGGTGGTGGCAATTCCTTTTCTAGTCGCGTCGTGCTCTATCTCTCTTCGCACTCTCCACTCCGCCTCTACTTGTCTCTCTCGGCGGCGGCGCGACGGCCTCCCTTTGCCGGCGCCGCTATCTTCCCCTTCTCCCCCTCTGCACTGTGTGTTGTGGCAAGAGCCTTAGAGGGTGGAGATCAACTAGATCTATCAAATGGGGTGAGATATGGTGAAAGCATAATATATAACTCAAGCCAGTACAATAGTGATATTATGAGATATAGAAGGATGATGGCTGATGGCAGTTTTAGCGTTTCTGATTATGATTTGTATAGTACACAACACAGTTCAAGAGAGTTGTATTCTTCTTCTTCTTCTTCAGGGATGCCAACTAGGCCAGGTGGTAATTCAGAACCTAGAAATTTCAAAACCCAAAGGAGCTTTGCTGAGCAACCATAA 2511 0.493 MAIPDDPSSNLTPSSFSDSSNFSPPDDDTQSPPSPHGHGDHDDNSSHKAKKNKSHDSNSSPHPSPKPPKSPKAPSKPPKHSPHPKAPPPSLPPPPPSPPPPPPPPPRAIPPPSPTLITPPPPSHLTPPQVIPPSHPPPPPPPPLPPNRPTTPPQSPPPPSRSGGGSSSKRHFPPPAWSSSHSRVYIEQHVGFAVAAISLISVVAFFIFYVLRKRKDRDRDFQYYVDKTNNGAQGGMYGSQRSQFTPVGGSGGYGSSGSNKRGGGVGMMYHLRSPSQISGGPMFYSYEQIVGVTKGFSSENVIGEGGFGYVYKALMPDGRVGAVKMLKSGSGQGDREFSAEIEIISRVHHRHLVSLIGYCIAQHHRVLVYEFVPNGNLSQHLHGNNFPVLDWANRMKIANGAAKGLAYLHEGCNPRIIHRDIKSANILLDNAYEARVADFGLARLTDDANTHVSTRVMGTFGYMAPEYATSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPIGHESLVEWARPHLLEAMGTREVGDLVDPRLQGRYVHTEMFTMIEAAAACVRHSAPNRPRMVQFFLLLIITTHNSKTTTTITTPNRRLISPTFIVKVEFCHFAGINHIENSTTTFLWHCLLPLSSKPSLFPFPRRQWRGGDCDVMFNDAKTRGDRAEILRQRLLYQTTTKQLGGSCSGSLFFLDGGAELGGGGNSFSSRVVLYLSSHSPLRLYLSLSAAARRPPFAGAAIFPFSPSALCVVARALEGGDQLDLSNGVRYGESIIYNSSQYNSDIMRYRRMMADGSFSVSDYDLYSTQHSSRELYSSSSSSGMPTRPGGNSEPRNFKTQRSFAEQP 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc13g00037 836 Pfam Protein tyrosine and serine/threonine kinase 299 499 IPR001245 GO:0004672|GO:0006468
Stsc13g00037 836 Gene3D Transferase(Phosphotransferase) domain 1 372 587 - -
Stsc13g00037 836 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 196 572 IPR047117 -
Stsc13g00037 836 Gene3D Phosphorylase Kinase; domain 1 269 371 - -
Stsc13g00037 836 MobiDBLite consensus disorder prediction 7 27 - -
Stsc13g00037 836 ProSiteProfiles Protein kinase domain profile. 296 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc13g00037 836 MobiDBLite consensus disorder prediction 1 179 - -
Stsc13g00037 836 FunFam proline-rich receptor-like protein kinase PERK8 372 584 - -
Stsc13g00037 836 MobiDBLite consensus disorder prediction 803 836 - -
Stsc13g00037 836 MobiDBLite consensus disorder prediction 161 179 - -
Stsc13g00037 836 SUPERFAMILY Protein kinase-like (PK-like) 273 571 IPR011009 -
Stsc13g00037 836 MobiDBLite consensus disorder prediction 61 160 - -
Stsc13g00037 836 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 270 371 - -
Stsc13g00037 836 SMART serkin_6 296 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc13g00037 836 CDD STKc_IRAK 302 562 - -
Stsc13g00037 836 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Stsc13g00037 836 MobiDBLite consensus disorder prediction 33 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc13g00037 Stsc-Chr13 212423 219174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc13g00037 739 803 Trihelix Transcription Factor Family AT1G70460 42.424 1.89e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Stsc13g00037 PK_Tyr_Ser-Thr 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc13g00037 - - adu:107488704 584.334