Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc13g00035 ATGGAGATCAAAAGAGCAAAGTTTATCTGCAGTTACGGCGGTGAGATCAAGACCCAGGGACGCAACGAGCTCACCTACGTCGGCGGAACAAATAAGCTCGTTTACGTTGATCGCAGAATTGACTTCGCAGGCATGCTTGCCTATATCTGTGACCGCTGTCGCCTCGATTGCAACGGTTACAACTTCAAGTACCAGATCCCCGACGGCAATATTCTCGTCCCCGTGACCAACGACAGGGACCTCAACAACTTGATGGTGGTGTACGATCGATTCAACCGTGCAAAGGCAACGCATATGAGACCCTCTGCTAGGGGTGCCTATTCTCAAGGGCAACGTTTTTCTGCATTTAAGGATGCGCTTTTGGAAAAGCGAATAGGCATCGCTCCCGAATATAAAAGGAAGGGGTCGCTTTTCATCACTCACCCCTATAAGAATAGGGGTGGCTTTTCACAGCTATGGCATCACTTAGCAAGCTTCATAAATAGCTTCAATGCTGCAGCAGCAATGGCAGAGTTGTTGTCTTCTGCAAGTCTCTACAACAAGAACCCGCAACAATAA 558 0.4839 MEIKRAKFICSYGGEIKTQGRNELTYVGGTNKLVYVDRRIDFAGMLAYICDRCRLDCNGYNFKYQIPDGNILVPVTNDRDLNNLMVVYDRFNRAKATHMRPSARGAYSQGQRFSAFKDALLEKRIGIAPEYKRKGSLFITHPYKNRGGFSQLWHHLASFINSFNAAAAMAELLSSASLYNKNPQQ 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc13g00035 185 SUPERFAMILY CAD & PB1 domains 22 96 - -
Stsc13g00035 185 PANTHER OS05G0427100 PROTEIN-RELATED 5 97 - -
Stsc13g00035 185 Pfam PB1 domain 24 91 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc13g00035 Stsc-Chr13 184580 186134 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc13g00035 3 85 MAP Kinase Kinase Kinase AT2G35050 33.721 1.26e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc13g00035 - - aip:107614910 108.612