Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc13g00033 ATGATCATGGCACCGGAACATATGAACATAGTCTTTGGCATACTCATAGTTGGAGGACTCATAATTGCCTTCACATTCTTCAGTTTCACCATGCTTGGATGGTGCAGTCACACTAGTGACATGCCAGTACCCCATCAAGGACCACCAGGGATATATTTCGACGACAAGTTCTCCGGCTGCGGCGCGAGTTTGGAGTCGCACTCGGTTACCTTCCAGTACAAGTCAGGAGGTGCTGTTGATGGTAGAAGCCAAACAGAGTGTGTTATCTGCTTGGCGCAGTTCGAAGAAGAGGAGAGTGTGCGGAAGCTTCACAGTTGCAGGCATATTTTCCACACTTCTTGCATTGATAGGTGGCTCCGCTCTCATACTGGATGCCCCCTATGCCGGAGTCAGATCGACCAATCGGCTTCCCCGAATGGAGCTGTATCTTCACTACAAAATAACCATATGATCTTGGTTTCTGTTGATTCCTGA 474 0.4852 MIMAPEHMNIVFGILIVGGLIIAFTFFSFTMLGWCSHTSDMPVPHQGPPGIYFDDKFSGCGASLESHSVTFQYKSGGAVDGRSQTECVICLAQFEEEESVRKLHSCRHIFHTSCIDRWLRSHTGCPLCRSQIDQSASPNGAVSSLQNNHMILVSVDS 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc13g00033 157 Pfam Ring finger domain 86 129 IPR001841 -
Stsc13g00033 157 SUPERFAMILY RING/U-box 82 135 - -
Stsc13g00033 157 SMART ring_2 87 128 IPR001841 -
Stsc13g00033 157 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Stsc13g00033 157 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 13 134 IPR044675 -
Stsc13g00033 157 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 137 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc13g00033 Stsc-Chr13 168168 169154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc13g00033 14 142 C3H Transcription Factor Family AT5G17600 35.915 4.49e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc13g00033 - - adu:107464721 251.906