LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc13g00032	ATGGCATCTTCCAAAGCTTTCCAAATAAAACTTGTTGTATTTGTTGCTGTCTTGCTTATTTCAAAATTCAAGGGCATGGAAGAAAACATGATATCAGAAAATTCTTATTCATATAAGGATAAAACTTTAGCTTTCCCAGCTCCTCAAATAAAATATGATGTCTTTGTTAGCTTTAGGGGTGCAGATATCCGCGAAGGTTTGCTTAGTCATTTGATTAAGGCATTTTATCAGAAACAAATTTTTGCCTTTGTTGATGAAAAGCTTGAGAGGGGAGATGATATATCAGAGGCACTTCTTGGAGCAATAGAAAAGTCTCTGATATCATTGGTCATATTCTCACAAGACTATGTTTCTTCGAGATGGTGTTTAGAGGAACTTGTGAAAATAGTTGAGTGTAGAGAAAAAGATGGGCACACTGTAATACCTGTTTTCTACAAAGTAGATCCATCAGATGTACGATATCAGAAGGATACCTTTGCAAATGTGTTTGTCGAACACGAGAAAAGATATCGTAAGATCAAGGTGCAAAATTGGAGAACTGCTTTGAAAAGCTCTGCTGATTTATCAGGATTTCACTCCACAAATTTTAGGAATGATGCTCAGCTTGTTGATCAAATTGTTGATATTATATCATCAAGATTAAATGACATGCATCAAGTTAAATCAAAAGGACTTGTTGGAATTCACAAACCAATTGCACAGTTAGAGTCTTTGATGCTCAAAGAATCAGAAGATGTCCGTGTTATTGGAATTTGGGGCTTGGGCGGTATTGGTAAGACAACCATTGGAGAAGAAGTATACAATAGAATGTGTCCTGAATATGAATCTTGCTGTTTCTTGGCAAATGTAAGAGAAGAGTCAGAAAGACATGGAATACTTTCTTTGAAGAAGCAGCTCTTTTCTACACTATTGAATGAAGAAAATTTGAGAATTGAATTAACAAAGGGATTGCCTGATTATGTTGAGAAAAGGCTTGGTCGCATGAAGGTCCTCATTGTTCTTGATGATTTGAATGATTCTGACCAGTTAGAAACATTAATTGGAGCTCATGATTGGTTTGGATCAGGTAGTAGAATCATTATAACAACTAGAGATAAGCAAGTGCTTGTTGGAGAAGCTGAAGATATATACCAAGTTGAGGCATTGGACTGTGATGAATCTCTTGAACTCTTCATTCTAAATGCCTTCAAACAGAACCAGTTTGAAATGGAGTATTGTGAGCTTTCAAGGAGGGTGGTCAAGTACGCCAAAGGCATTCCACTAGTTGTTAAAGTTTTGGCTCAGCTTCTTCGCGGGAAACAAAAGGATATATGGGAAAGTCAATTGGAGAAGCTTAAGAGAATGCCAAATAAGAAAGTTCATGATATATTGCGGCTGAGCTACGATGATCTTGATCGTCAAGAGCAACAGATTTTTTTAGACATTGCCTGCTTTTTCAATGGTTTGAAGTTGAAATTGGAATACATAAACGTTTTACTGAAAGACCATGATTATTCAGTGGCTGCTGAGATGGAAAGGCTGAAAGATAAGGCTCTTATAATTATTTCTGATCAAAATATTGTATCTATGCATGATATTATTCAAGAAATGGCTTGGGAGATCATTCATGATGGCTCTGCTGAATACCCTGGAAACCAACTTCGGTTATGGGATTCTCATGACATATATCAAGTATTGAAAACCAACAGGGGGAGTGAGGCCATTAGAAGCATATCCTTCAACTTCTCAGCAGTTAAGGACCTTCAGTTAAGCCAAGAAATATTTGCTAAGATGAGCAAACTACGATTTCTAAATTTCTATAGCAATATATCTCAAGAGGCCTTTTATAGTTCTGATGGACTTCCGTCTTCGTGGAACAAAGCCTTGTATCTTCCTCAAGGACTTGATTCTTTTTCAAATGAACTAAGATATCTTAGTTGGATGCATTACCCTCTGGATTCCTTGCCAACCAACTTTTCTGCGGAAAATCTAGTAATATTGGACTTGTCCTTCAACCTAATGGAAAAACTTTGGTGTGGAGTGAAAAATCTGGAGAATTTAAAGATCCTTAGATTATATAATTCCTTACGCCTGACCATGCTGCCAAACTTGTCGAAAGCCAGAAACCTTGAAATACTAGTTATTCGAAAGAGTTACAGTTTGCTTTGTGTACACGCATCTGTTTTTGGTCTCAACAAGCTTGAGATATTGGATCTAGGAGGGTGTATTTCCCTTAGGCAGCTCCGAAGCCATATCCATTTGAGCTCTCTCTGTTATCTCTCTCTCGCTGGCTGCGTAAGACTACAAGACTTATCAGTTACCTCAGAGAATATGGAAGAGTTGAACTTAGAGCTCACAGGTATCCAACAATTACCTGCATCTTTCGGGCGTCAAAGAAAACTAGAAACATTACGTCTAGGACTATCTGATATTCAGAGTCTTCCTGAAGCCATCAAGAATCTCACAAGGTTCAAATATCTCAGCATCAGATATTGTTGGGACCTCAGGGCTTTACCAGAGCTTCCCCCATCCGTTGAGTATCTAGATGCCACTGGATGCACATCACTCAAGAGAGTGTTGTTTCCATCGTCGGCTGCCTTGCAGCTTAAGGAAAACAGGAAAAGCATTTTGTTCTGGAATTGCTTGAAATTGGATCAACACTCTCTTGATGCTATTGGGTTGAATGCAGAAATCAATCTCATGAAGTTTGCATACCAGCATTTATCAGCATTAACACATGACTACCATAAAGATAATGACAATGAAGCCATTTATGTGTATCCGGGAAGCGACGTTCCAAAGTGGTTGGTGTATAGAACATCACATGATTATGTAAATGTTGATATCTCTTCTTCGGCTGCACCACATTCCCCTCCGTTGGGCTTCATATTTTGCTTCGTTATTCCACGAATCGTCTCGGACGGTTTTGCTTTCAGGTTTACCATAAGTGTTGGTGAAGATGAAGGAAACAATGTGAAATTTTACATGGAGAGACCACTTGAAAAAATTGTTTCAGATCATGTGTATCTCGTGTATGATCACCGACTTACTCACTTCCTTAATAGCAGAAGCAATGTTGAAGATCAGCAGAGGCTTAAAATTAAGGTTGCAGTGGTGACACAGACAGGGAAATCAGATTATGTGCCTGTGAAGCTAAAAGGGTTTGGGGTCAGTCCAATAAAAGCATCAGAATATCGAAATTTTTTTCGGAAGATGGAATTGGTTGACAGGAAGAGGAAAGTTGAAGCTTTACATTCTGGAAATACTTCACTTGAAAGATTTTGCTTCCAAGACCAGAAAACTTACTTGGACTTCATTCAAGAAATCAACTATGTTGATGGTTGTTGGAAATTCAAACACCATCAATTCACAAATTACTCATATAGTTGTTGA	3372	0.3805	MASSKAFQIKLVVFVAVLLISKFKGMEENMISENSYSYKDKTLAFPAPQIKYDVFVSFRGADIREGLLSHLIKAFYQKQIFAFVDEKLERGDDISEALLGAIEKSLISLVIFSQDYVSSRWCLEELVKIVECREKDGHTVIPVFYKVDPSDVRYQKDTFANVFVEHEKRYRKIKVQNWRTALKSSADLSGFHSTNFRNDAQLVDQIVDIISSRLNDMHQVKSKGLVGIHKPIAQLESLMLKESEDVRVIGIWGLGGIGKTTIGEEVYNRMCPEYESCCFLANVREESERHGILSLKKQLFSTLLNEENLRIELTKGLPDYVEKRLGRMKVLIVLDDLNDSDQLETLIGAHDWFGSGSRIIITTRDKQVLVGEAEDIYQVEALDCDESLELFILNAFKQNQFEMEYCELSRRVVKYAKGIPLVVKVLAQLLRGKQKDIWESQLEKLKRMPNKKVHDILRLSYDDLDRQEQQIFLDIACFFNGLKLKLEYINVLLKDHDYSVAAEMERLKDKALIIISDQNIVSMHDIIQEMAWEIIHDGSAEYPGNQLRLWDSHDIYQVLKTNRGSEAIRSISFNFSAVKDLQLSQEIFAKMSKLRFLNFYSNISQEAFYSSDGLPSSWNKALYLPQGLDSFSNELRYLSWMHYPLDSLPTNFSAENLVILDLSFNLMEKLWCGVKNLENLKILRLYNSLRLTMLPNLSKARNLEILVIRKSYSLLCVHASVFGLNKLEILDLGGCISLRQLRSHIHLSSLCYLSLAGCVRLQDLSVTSENMEELNLELTGIQQLPASFGRQRKLETLRLGLSDIQSLPEAIKNLTRFKYLSIRYCWDLRALPELPPSVEYLDATGCTSLKRVLFPSSAALQLKENRKSILFWNCLKLDQHSLDAIGLNAEINLMKFAYQHLSALTHDYHKDNDNEAIYVYPGSDVPKWLVYRTSHDYVNVDISSSAAPHSPPLGFIFCFVIPRIVSDGFAFRFTISVGEDEGNNVKFYMERPLEKIVSDHVYLVYDHRLTHFLNSRSNVEDQQRLKIKVAVVTQTGKSDYVPVKLKGFGVSPIKASEYRNFFRKMELVDRKRKVEALHSGNTSLERFCFQDQKTYLDFIQEINYVDGCWKFKHHQFTNYSYSC	1123

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc13g00032	1123	SUPERFAMILY	Toll/Interleukin receptor TIR domain	48	191	IPR035897	-
	Stsc13g00032	1123	SUPERFAMILY	"Winged helix" DNA-binding domain	451	560	IPR036390	-
	Stsc13g00032	1123	Gene3D	-	381	465	IPR042197	-
	Stsc13g00032	1123	Gene3D	-	217	378	IPR027417	-
	Stsc13g00032	1123	SMART	till_3	51	188	IPR000157	GO:0007165
	Stsc13g00032	1123	Pfam	TIR domain	51	225	IPR000157	GO:0007165
	Stsc13g00032	1123	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	213	475	IPR027417	-
	Stsc13g00032	1123	FunFam	Disease resistance protein (TIR-NBS-LRR class)	48	216	-	-
	Stsc13g00032	1123	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	52	848	IPR044974	GO:0006952
	Stsc13g00032	1123	Gene3D	Ribonuclease Inhibitor	517	737	IPR032675	-
	Stsc13g00032	1123	Gene3D	-	49	216	IPR035897	-
	Stsc13g00032	1123	Pfam	NB-ARC domain	240	463	IPR002182	GO:0043531
	Stsc13g00032	1123	ProSiteProfiles	TIR domain profile.	50	214	IPR000157	GO:0007165
	Stsc13g00032	1123	Gene3D	Ribonuclease Inhibitor	746	880	IPR032675	-
	Stsc13g00032	1123	PRINTS	Disease resistance protein signature	722	738	-	-
	Stsc13g00032	1123	PRINTS	Disease resistance protein signature	416	430	-	-
	Stsc13g00032	1123	PRINTS	Disease resistance protein signature	324	338	-	-
	Stsc13g00032	1123	PRINTS	Disease resistance protein signature	248	263	-	-
	Stsc13g00032	1123	SUPERFAMILY	L domain-like	574	883	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc13g00032	Stsc-Chr13	168168	172942	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc13g00032	52	854	WRKY Transcription Factor Family	AT4G12020	31.862	1.30e-102	355

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc13g00032	-		-	ahf:112776244	1587.78