Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc13g00032 ATGGCATCTTCCAAAGCTTTCCAAATAAAACTTGTTGTATTTGTTGCTGTCTTGCTTATTTCAAAATTCAAGGGCATGGAAGAAAACATGATATCAGAAAATTCTTATTCATATAAGGATAAAACTTTAGCTTTCCCAGCTCCTCAAATAAAATATGATGTCTTTGTTAGCTTTAGGGGTGCAGATATCCGCGAAGGTTTGCTTAGTCATTTGATTAAGGCATTTTATCAGAAACAAATTTTTGCCTTTGTTGATGAAAAGCTTGAGAGGGGAGATGATATATCAGAGGCACTTCTTGGAGCAATAGAAAAGTCTCTGATATCATTGGTCATATTCTCACAAGACTATGTTTCTTCGAGATGGTGTTTAGAGGAACTTGTGAAAATAGTTGAGTGTAGAGAAAAAGATGGGCACACTGTAATACCTGTTTTCTACAAAGTAGATCCATCAGATGTACGATATCAGAAGGATACCTTTGCAAATGTGTTTGTCGAACACGAGAAAAGATATCGTAAGATCAAGGTGCAAAATTGGAGAACTGCTTTGAAAAGCTCTGCTGATTTATCAGGATTTCACTCCACAAATTTTAGGAATGATGCTCAGCTTGTTGATCAAATTGTTGATATTATATCATCAAGATTAAATGACATGCATCAAGTTAAATCAAAAGGACTTGTTGGAATTCACAAACCAATTGCACAGTTAGAGTCTTTGATGCTCAAAGAATCAGAAGATGTCCGTGTTATTGGAATTTGGGGCTTGGGCGGTATTGGTAAGACAACCATTGGAGAAGAAGTATACAATAGAATGTGTCCTGAATATGAATCTTGCTGTTTCTTGGCAAATGTAAGAGAAGAGTCAGAAAGACATGGAATACTTTCTTTGAAGAAGCAGCTCTTTTCTACACTATTGAATGAAGAAAATTTGAGAATTGAATTAACAAAGGGATTGCCTGATTATGTTGAGAAAAGGCTTGGTCGCATGAAGGTCCTCATTGTTCTTGATGATTTGAATGATTCTGACCAGTTAGAAACATTAATTGGAGCTCATGATTGGTTTGGATCAGGTAGTAGAATCATTATAACAACTAGAGATAAGCAAGTGCTTGTTGGAGAAGCTGAAGATATATACCAAGTTGAGGCATTGGACTGTGATGAATCTCTTGAACTCTTCATTCTAAATGCCTTCAAACAGAACCAGTTTGAAATGGAGTATTGTGAGCTTTCAAGGAGGGTGGTCAAGTACGCCAAAGGCATTCCACTAGTTGTTAAAGTTTTGGCTCAGCTTCTTCGCGGGAAACAAAAGGATATATGGGAAAGTCAATTGGAGAAGCTTAAGAGAATGCCAAATAAGAAAGTTCATGATATATTGCGGCTGAGCTACGATGATCTTGATCGTCAAGAGCAACAGATTTTTTTAGACATTGCCTGCTTTTTCAATGGTTTGAAGTTGAAATTGGAATACATAAACGTTTTACTGAAAGACCATGATTATTCAGTGGCTGCTGAGATGGAAAGGCTGAAAGATAAGGCTCTTATAATTATTTCTGATCAAAATATTGTATCTATGCATGATATTATTCAAGAAATGGCTTGGGAGATCATTCATGATGGCTCTGCTGAATACCCTGGAAACCAACTTCGGTTATGGGATTCTCATGACATATATCAAGTATTGAAAACCAACAGGGGGAGTGAGGCCATTAGAAGCATATCCTTCAACTTCTCAGCAGTTAAGGACCTTCAGTTAAGCCAAGAAATATTTGCTAAGATGAGCAAACTACGATTTCTAAATTTCTATAGCAATATATCTCAAGAGGCCTTTTATAGTTCTGATGGACTTCCGTCTTCGTGGAACAAAGCCTTGTATCTTCCTCAAGGACTTGATTCTTTTTCAAATGAACTAAGATATCTTAGTTGGATGCATTACCCTCTGGATTCCTTGCCAACCAACTTTTCTGCGGAAAATCTAGTAATATTGGACTTGTCCTTCAACCTAATGGAAAAACTTTGGTGTGGAGTGAAAAATCTGGAGAATTTAAAGATCCTTAGATTATATAATTCCTTACGCCTGACCATGCTGCCAAACTTGTCGAAAGCCAGAAACCTTGAAATACTAGTTATTCGAAAGAGTTACAGTTTGCTTTGTGTACACGCATCTGTTTTTGGTCTCAACAAGCTTGAGATATTGGATCTAGGAGGGTGTATTTCCCTTAGGCAGCTCCGAAGCCATATCCATTTGAGCTCTCTCTGTTATCTCTCTCTCGCTGGCTGCGTAAGACTACAAGACTTATCAGTTACCTCAGAGAATATGGAAGAGTTGAACTTAGAGCTCACAGGTATCCAACAATTACCTGCATCTTTCGGGCGTCAAAGAAAACTAGAAACATTACGTCTAGGACTATCTGATATTCAGAGTCTTCCTGAAGCCATCAAGAATCTCACAAGGTTCAAATATCTCAGCATCAGATATTGTTGGGACCTCAGGGCTTTACCAGAGCTTCCCCCATCCGTTGAGTATCTAGATGCCACTGGATGCACATCACTCAAGAGAGTGTTGTTTCCATCGTCGGCTGCCTTGCAGCTTAAGGAAAACAGGAAAAGCATTTTGTTCTGGAATTGCTTGAAATTGGATCAACACTCTCTTGATGCTATTGGGTTGAATGCAGAAATCAATCTCATGAAGTTTGCATACCAGCATTTATCAGCATTAACACATGACTACCATAAAGATAATGACAATGAAGCCATTTATGTGTATCCGGGAAGCGACGTTCCAAAGTGGTTGGTGTATAGAACATCACATGATTATGTAAATGTTGATATCTCTTCTTCGGCTGCACCACATTCCCCTCCGTTGGGCTTCATATTTTGCTTCGTTATTCCACGAATCGTCTCGGACGGTTTTGCTTTCAGGTTTACCATAAGTGTTGGTGAAGATGAAGGAAACAATGTGAAATTTTACATGGAGAGACCACTTGAAAAAATTGTTTCAGATCATGTGTATCTCGTGTATGATCACCGACTTACTCACTTCCTTAATAGCAGAAGCAATGTTGAAGATCAGCAGAGGCTTAAAATTAAGGTTGCAGTGGTGACACAGACAGGGAAATCAGATTATGTGCCTGTGAAGCTAAAAGGGTTTGGGGTCAGTCCAATAAAAGCATCAGAATATCGAAATTTTTTTCGGAAGATGGAATTGGTTGACAGGAAGAGGAAAGTTGAAGCTTTACATTCTGGAAATACTTCACTTGAAAGATTTTGCTTCCAAGACCAGAAAACTTACTTGGACTTCATTCAAGAAATCAACTATGTTGATGGTTGTTGGAAATTCAAACACCATCAATTCACAAATTACTCATATAGTTGTTGA 3372 0.3805 MASSKAFQIKLVVFVAVLLISKFKGMEENMISENSYSYKDKTLAFPAPQIKYDVFVSFRGADIREGLLSHLIKAFYQKQIFAFVDEKLERGDDISEALLGAIEKSLISLVIFSQDYVSSRWCLEELVKIVECREKDGHTVIPVFYKVDPSDVRYQKDTFANVFVEHEKRYRKIKVQNWRTALKSSADLSGFHSTNFRNDAQLVDQIVDIISSRLNDMHQVKSKGLVGIHKPIAQLESLMLKESEDVRVIGIWGLGGIGKTTIGEEVYNRMCPEYESCCFLANVREESERHGILSLKKQLFSTLLNEENLRIELTKGLPDYVEKRLGRMKVLIVLDDLNDSDQLETLIGAHDWFGSGSRIIITTRDKQVLVGEAEDIYQVEALDCDESLELFILNAFKQNQFEMEYCELSRRVVKYAKGIPLVVKVLAQLLRGKQKDIWESQLEKLKRMPNKKVHDILRLSYDDLDRQEQQIFLDIACFFNGLKLKLEYINVLLKDHDYSVAAEMERLKDKALIIISDQNIVSMHDIIQEMAWEIIHDGSAEYPGNQLRLWDSHDIYQVLKTNRGSEAIRSISFNFSAVKDLQLSQEIFAKMSKLRFLNFYSNISQEAFYSSDGLPSSWNKALYLPQGLDSFSNELRYLSWMHYPLDSLPTNFSAENLVILDLSFNLMEKLWCGVKNLENLKILRLYNSLRLTMLPNLSKARNLEILVIRKSYSLLCVHASVFGLNKLEILDLGGCISLRQLRSHIHLSSLCYLSLAGCVRLQDLSVTSENMEELNLELTGIQQLPASFGRQRKLETLRLGLSDIQSLPEAIKNLTRFKYLSIRYCWDLRALPELPPSVEYLDATGCTSLKRVLFPSSAALQLKENRKSILFWNCLKLDQHSLDAIGLNAEINLMKFAYQHLSALTHDYHKDNDNEAIYVYPGSDVPKWLVYRTSHDYVNVDISSSAAPHSPPLGFIFCFVIPRIVSDGFAFRFTISVGEDEGNNVKFYMERPLEKIVSDHVYLVYDHRLTHFLNSRSNVEDQQRLKIKVAVVTQTGKSDYVPVKLKGFGVSPIKASEYRNFFRKMELVDRKRKVEALHSGNTSLERFCFQDQKTYLDFIQEINYVDGCWKFKHHQFTNYSYSC 1123
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc13g00032 1123 SUPERFAMILY Toll/Interleukin receptor TIR domain 48 191 IPR035897 -
Stsc13g00032 1123 SUPERFAMILY "Winged helix" DNA-binding domain 451 560 IPR036390 -
Stsc13g00032 1123 Gene3D - 381 465 IPR042197 -
Stsc13g00032 1123 Gene3D - 217 378 IPR027417 -
Stsc13g00032 1123 SMART till_3 51 188 IPR000157 GO:0007165
Stsc13g00032 1123 Pfam TIR domain 51 225 IPR000157 GO:0007165
Stsc13g00032 1123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 475 IPR027417 -
Stsc13g00032 1123 FunFam Disease resistance protein (TIR-NBS-LRR class) 48 216 - -
Stsc13g00032 1123 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 52 848 IPR044974 GO:0006952
Stsc13g00032 1123 Gene3D Ribonuclease Inhibitor 517 737 IPR032675 -
Stsc13g00032 1123 Gene3D - 49 216 IPR035897 -
Stsc13g00032 1123 Pfam NB-ARC domain 240 463 IPR002182 GO:0043531
Stsc13g00032 1123 ProSiteProfiles TIR domain profile. 50 214 IPR000157 GO:0007165
Stsc13g00032 1123 Gene3D Ribonuclease Inhibitor 746 880 IPR032675 -
Stsc13g00032 1123 PRINTS Disease resistance protein signature 722 738 - -
Stsc13g00032 1123 PRINTS Disease resistance protein signature 416 430 - -
Stsc13g00032 1123 PRINTS Disease resistance protein signature 324 338 - -
Stsc13g00032 1123 PRINTS Disease resistance protein signature 248 263 - -
Stsc13g00032 1123 SUPERFAMILY L domain-like 574 883 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc13g00032 Stsc-Chr13 168168 172942 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc13g00032 52 854 WRKY Transcription Factor Family AT4G12020 31.862 1.30e-102 355
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc13g00032 - - ahf:112776244 1587.78