Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc13g00031 ATGGCATTATTATTCAGATATATCATTGAATTAGCTGTTGCCATAATAGCAATTTTTTGTTTTTCAATTATTTCAAGATTCGATGGACAGAAAACCATACTCACAGTTACGTCTGAGAATGCTCCTCCTCCCCCTCCTCCTCCATATCCAGAGCCATCACCGCCACAAACTCATCAAACAAAGTATGATGTGTTCATCAGCTTCAGCGGCAACGACACTCGAGAAGGTTTGCTTAGCCATCTCACTAAGGCATTATACCAGAGACAAATCGACACCTTCGTTGACACCAGGCTCAACGAAGGCCAAGACATCTCCCAAGAACTTCTCCGAGCTATTGAGAGGTCATTGATTTCCTTGGTGGTGTTCTCGGAAAGTTATGCTTCTTCGTCTTGGTGTTTGGATGAGTTGTTGAAGATTATGGAGTGTAGAAGAGAACAAGGTCAAATTGTTATACCTGTTTTCTACAAAGTGGAGCCCTCCGATGTGAGACATTCAAAGGGTGTGTTTTCTGATGCCTTTGCTAAACAAGAGAAAAGGCATGGTAAGCAAAAGGTGCAAACCTGGAGATCTGCTTTTGGCCAAGCTGCTAATATTTCAGGCCTTCATTATTCTACAAAATTATTCGGGAATGAAGCTGAGCTGATTGAAGCTATCGTCCAATTAGTGAACTCTAAGTTGAAAAGCATGCGGCAAGTTTCCACAAAAGGACTTCCTGGAATCGGCAAATCAATTGCTAGTGTGGAATCATTACTCCGCCAAGATCCAGAGAGCGTCCGCGTTGTTGGAATTTGGGGCATGGGTGGCATTGGAAAGACTACAATCGCTGAAGAAGTCTATAACCTTCTCCGTTTTGAATTCGAAGCTTCTGTTTTTCTACGTAACGTTAGGGAAGTCTCTCTCCGACGTGGAATAACCTATTTGAAGAATGAACTCTTCTCCACTCTCTTAGGCGAAGCTCTCAAAATCGAAACACAAAGATTGCCGACTTATGTTGAGAAGAAAATTGAGCGCATGAAGGTTCTTATTGTTCTTGATGATGTCAGCCAGTCAGAGCAGTTTGAGATTCTACTTGGAAAGCTGGAATGTTTTGGATCCGGAAGTAGAATTGTTGTAACTACCAGAGATAGACACGTGCTTGGGACGTATGATACATACAAGGTTGAACCGTTGGAACGTGATGAAGCACTTAAGCTTTTCAATTTCATTGTGAATCAAGGAGAAGGCAAGGATTTCGCTGAGCTGGCAGAGAATGTGGTTCATCATGCCAATGGCATTCCGGTGGTTATCAAGAGCGTTGCTCATCTTATTCGCGGTAAGGATAAGCGGATTTGGGAAAGCGAATTGGAGAAGCTTGGCAAGATACCAAATGAGGAGGTTTTTGGTATAATGAGGCTGAGTTATGATGACTTGGATAAGTATCAGAAAGAAATGCTTTTGGACATTGCATGCTTCTTTGATGGGATGAAGTTGAAAGTGAAGTACTTGGAAAGTTTGTTAAAGCATGGCCACTATAGGGTTCTTCCAGCATTGAAAAGACTTGAAGATTTATGTTTGATAACCATTTCTAAAGAGGATGTGGTAACAATGCATGACATTGTACAAGAAATGGCTTGGGAGATTGTTCGCCAAGAATCTATTGAAGACCCTGCCACCCATAGTCGAATTTGGAATCCTGACTACATTTATCAACTACTCAAAAATAATCAGGGGAGTGAGGCCATTAGAAGCCTAAATTTCAGCTATTCCAAAGCAACAACAGTTAGGGACATGCAGTTAAGCCCTCATGTATTTTCTAAGATGAGTAAGCTGCGATTTCTTGACTTCTATGGAGAACAAGGCCTCTTAAAGTTTCCTGAGGGTCTTCATCAGTTGCCAAGTCGACTAAGATATCTTCGTTGGACTTATTACCCTCTAAATTCATTGCCAAAGGAATTTTCTGCAGAGAACCTAGTCATATTGGAATTACCTTATAGTAAAGTGGAAAAGCTTTGGTATGGGATCCAGAATCTTGAGAAATTGAAGGTCCTTAAGGCTCCATATTCCTCACAGTTGAAGGAGTTTCCAGACTTATCAAGGGCCATCAATCTTGAGATATTGGATCTCAAATATTGTCTTCTCTTGACTCGTGTCCATCCGTCTATCTTCTCCCTCAACAAGCTTGAGACTTTGGATCTAAGCTGGTGCTCTTCACTTACCAAACTTGAAACCAATGCTCACTTCACATCCCTTCGTTATCTGAGTCTCTATCACTGCAAAAGATTGAACAAATTCTCAGTGACATCAGAAAACATGACAGAAGTTGATCTGCGACACACGTCCATCCGAGAATTGCCCTTGTCCTTTGGATGTCAAAGCAAACTCGAAAAGCTTCATCTAGCAAACTCTGAAATAAAGTGGATGCCTGATAGCCTCAAGCTTCTCACTAGTCTGAAATATCTTGACATAAGTGATTGCAAGAATCTTCAAACTCTACCAGAGCTTCCACTCTCCATAGAAACATTAGATGCAGAGAACTGCACCTCATTGAAGACCGTGTTTTTCCCAAATATCAGTCAACAGCTGAAGGAAAACAAGAAGGAGGTTGTGTTCTGGAACTGCTTGAAGTTGGATAAGCAAGTTCTCGAGGCTTTCCCATTGAATGCTCTTATCAACATGGTGAGATTTACAAATCAATATTTGTCTGCTGCACTAGAACATGATAATGTAGACAATTCAAATGAAGACCCTGAAGCCTCTTATGTGTATCCAGGGAGCATTGTTCCAAAGTGGTTTAGGTATCAAACAACAATGGATCACCTAACTGTTAATCTCTCTTCTGCTCCATATGCACCCAAATTGGGCTTTATTTTATGCTTCATTGTTCCTGTAGTACCATTTGAGGGTTTAAGGTTGATGTTTACAGTCCATAGTGACGACGAAGATGATGGCAACAAGGTCATCCATTTGAACGTGGATAGACCAAGGAAGGTGATTTCTTCGGATCACGTGACTCTATTCTACGATCAACGTTGCAGTAGCTTCCTAAATGGCAGATATAAAGCTCGAGGAATTTTTAAAATCAAGGTGTCAGTTGTGTCAATATCAATTGCATCAGATCATGTGCCAGTGGAGTTGAAAGGCTTTGGAGTGCACCCAGTAAACCCATCAAAGTATTCTAGTTTTAAAGAAAACATGGAACTGTGGGGTTATCATATTCCTGTAACTGTGAAACCGGTTTCATGGTTGAATGGATTTGTGTCGTGGATTATAGGTCGATTAATAATGTGA 3267 0.4108 MALLFRYIIELAVAIIAIFCFSIISRFDGQKTILTVTSENAPPPPPPPYPEPSPPQTHQTKYDVFISFSGNDTREGLLSHLTKALYQRQIDTFVDTRLNEGQDISQELLRAIERSLISLVVFSESYASSSWCLDELLKIMECRREQGQIVIPVFYKVEPSDVRHSKGVFSDAFAKQEKRHGKQKVQTWRSAFGQAANISGLHYSTKLFGNEAELIEAIVQLVNSKLKSMRQVSTKGLPGIGKSIASVESLLRQDPESVRVVGIWGMGGIGKTTIAEEVYNLLRFEFEASVFLRNVREVSLRRGITYLKNELFSTLLGEALKIETQRLPTYVEKKIERMKVLIVLDDVSQSEQFEILLGKLECFGSGSRIVVTTRDRHVLGTYDTYKVEPLERDEALKLFNFIVNQGEGKDFAELAENVVHHANGIPVVIKSVAHLIRGKDKRIWESELEKLGKIPNEEVFGIMRLSYDDLDKYQKEMLLDIACFFDGMKLKVKYLESLLKHGHYRVLPALKRLEDLCLITISKEDVVTMHDIVQEMAWEIVRQESIEDPATHSRIWNPDYIYQLLKNNQGSEAIRSLNFSYSKATTVRDMQLSPHVFSKMSKLRFLDFYGEQGLLKFPEGLHQLPSRLRYLRWTYYPLNSLPKEFSAENLVILELPYSKVEKLWYGIQNLEKLKVLKAPYSSQLKEFPDLSRAINLEILDLKYCLLLTRVHPSIFSLNKLETLDLSWCSSLTKLETNAHFTSLRYLSLYHCKRLNKFSVTSENMTEVDLRHTSIRELPLSFGCQSKLEKLHLANSEIKWMPDSLKLLTSLKYLDISDCKNLQTLPELPLSIETLDAENCTSLKTVFFPNISQQLKENKKEVVFWNCLKLDKQVLEAFPLNALINMVRFTNQYLSAALEHDNVDNSNEDPEASYVYPGSIVPKWFRYQTTMDHLTVNLSSAPYAPKLGFILCFIVPVVPFEGLRLMFTVHSDDEDDGNKVIHLNVDRPRKVISSDHVTLFYDQRCSSFLNGRYKARGIFKIKVSVVSISIASDHVPVELKGFGVHPVNPSKYSSFKENMELWGYHIPVTVKPVSWLNGFVSWIIGRLIM 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc13g00031 1088 SUPERFAMILY "Winged helix" DNA-binding domain 458 566 IPR036390 -
Stsc13g00031 1088 Pfam NB-ARC domain 248 453 IPR002182 GO:0043531
Stsc13g00031 1088 Pfam Leucine Rich Repeat 649 668 IPR011713 -
Stsc13g00031 1088 Pfam C-JID domain 916 1005 IPR045344 -
Stsc13g00031 1088 FunFam Disease resistance protein (TIR-NBS-LRR class) 58 228 - -
Stsc13g00031 1088 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 481 IPR027417 -
Stsc13g00031 1088 Gene3D - 467 539 IPR036388 -
Stsc13g00031 1088 PRINTS Disease resistance protein signature 260 275 - -
Stsc13g00031 1088 PRINTS Disease resistance protein signature 422 436 - -
Stsc13g00031 1088 PRINTS Disease resistance protein signature 334 348 - -
Stsc13g00031 1088 PRINTS Disease resistance protein signature 715 731 - -
Stsc13g00031 1088 Pfam TIR domain 61 232 IPR000157 GO:0007165
Stsc13g00031 1088 Gene3D - 390 466 IPR042197 -
Stsc13g00031 1088 Gene3D Ribonuclease Inhibitor 558 761 IPR032675 -
Stsc13g00031 1088 SMART till_3 61 198 IPR000157 GO:0007165
Stsc13g00031 1088 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 62 757 IPR044974 GO:0006952
Stsc13g00031 1088 MobiDBLite consensus disorder prediction 39 55 - -
Stsc13g00031 1088 SUPERFAMILY Toll/Interleukin receptor TIR domain 53 200 IPR035897 -
Stsc13g00031 1088 SUPERFAMILY L domain-like 590 871 - -
Stsc13g00031 1088 Gene3D Ribonuclease Inhibitor 762 881 IPR032675 -
Stsc13g00031 1088 MobiDBLite consensus disorder prediction 36 58 - -
Stsc13g00031 1088 Gene3D - 243 386 IPR027417 -
Stsc13g00031 1088 ProSiteProfiles TIR domain profile. 60 226 IPR000157 GO:0007165
Stsc13g00031 1088 Gene3D - 59 233 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc13g00031 Stsc-Chr13 156264 161365 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc13g00031 52 826 WRKY Transcription Factor Family AT4G12020 32.918 3.83e-99 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc13g00031 - - adu:107464771 1552.73