Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc13g00030 ATGTTCAACTTGTGGCCAAATGCCATATTTGCCAACCATGCTCTTAAAGATTTCCATCCCCTCTATTACAAGCCCTCCATGGCTACAAGCACTCAGAACTGCCAACAAGAATCATTACTCCGCCAAGATCCACAAAGCGTCCGAGTGATCGGAATCTGGGGAATAGGTGGCCCTGGAAAGACAACAATTGCAGAACAAGTCTATAACCTTCTCCGTGATGAATTCGAAGCTGAAGCTGCTGTTTTTCTACAAAACTTAAAGCGAGGTATCACTAAACCCTTAGGCGAAGATCCCAAAATTGACATGCAAAATGGATTGCCTACTTATGTTGAGAAGAGAATTGGCCGAATGAAGGTTCTTATTGTTCTCGACGATGTCAGTGAATCAGAGTAG 393 0.4351 MFNLWPNAIFANHALKDFHPLYYKPSMATSTQNCQQESLLRQDPQSVRVIGIWGIGGPGKTTIAEQVYNLLRDEFEAEAAVFLQNLKRGITKPLGEDPKIDMQNGLPTYVEKRIGRMKVLIVLDDVSESE 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc13g00030 130 Gene3D - 20 130 IPR027417 -
Stsc13g00030 130 Pfam NB-ARC domain 36 129 IPR002182 GO:0043531
Stsc13g00030 130 PRINTS Disease resistance protein signature 113 127 - -
Stsc13g00030 130 PRINTS Disease resistance protein signature 49 64 - -
Stsc13g00030 130 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 35 129 IPR044974 GO:0006952
Stsc13g00030 130 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 128 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc13g00030 Stsc-Chr13 154806 155511 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc13g00030 37 126 WRKY Transcription Factor Family AT5G45050 32.000 1.03e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc13g00030 - - adu:107464771 129.028