Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc13g00029 ATGGCACATTCATCTTTTTTCCAATCATCTCAGATAGCATATGTTGTATTTGTTTGTCTCTTGCTTATTCTCCAACTGAAGGGTGGTGTGGGAACATCATCTCCTGGAGATGCTGCTCTTAAGATAAAGTATGATGTCTTTGTTAGCTTCAGAGGTCCGGACGTCAGGCGTGGCTTCCTTGGTCATTTGGTTGACGCACTCTCTAGAAAGAAAATTCATGCCTTTGTAGATGATAACATTGAGGTAGGAGATGAGATACCAAAATCACTCGTTGGAGCAATCCAAGCATCATTAATTTCACTGGTTATATTGTCCCCAAACTATGCTTCTTCACACTGGTGTTTGGAGGAACTTGCTAAAATAGTTGAGTGCAGAGAAAATGATGGCCAATTTGTGCTACCAGTTTTCTTCGATGTGGATCCCTCAGACGTGCGCTATCAAAAAGGATCCTATGCAGATGCATTTGTTAAACTTGAGGAGAGATATGATTTGGTCAAGATTCAACGTTGGAGGACTGCTTTGCAAAAAACTGCTAACTTGTCTGGATTAACTTCAACAAAACATGGGAATGACAATGGGCTTCTTGAAGAAATCATAAAAAATGTGAAAAAGATATTGAATCACGATCAGAAATATATCTCAGAAGGGCTTATTGGAATTGGCAAATCAATTGCACTCTTAGAGTCAGAATTGAACCCAGAGTTAGAAGACGTGCGTGTTTTTGGGATTTGGGGAATGGGTGGCTTGGGTAAGACAACTCTTGCATGGGAAGTGTTTAACAGCGTACGGTCACAATACGAAGGTTCTTGTTTTCTGAGAAATGTAAGGGAAAATTCAGCCAGGGAAGGAATCATTTCTTTGAAGAACAAGCTTTATTCTGAACTCATAGGTGAGGACTTGAAAATTGATGGCTCAAATGGATTGCCCCAATTTGTTGAGAAAAGACTTGGTCGGATGAAGGTTATCATTGTTCTAGATGATGTCAGTGATTTTCAGCAACTGAAAATACTGTTTGGAACAAGGGAACATTTTGGATCAAGTAGTAGAATCATTGTAACTTCCAGAGATAAGCAAGTGTTGCATACAGAAGTTGATTCTACATACCAAGTTAAGCCATTGCACTTTGATGAATCGCTTCGACTTTTCAATTTGATTGCCTTCAAACAAAAACAACATCTTGAGATGGAATTTCATGAACAATCAAAGAAGGTCATTGAGTATGCCAAAGGTATTCCATTAGTCCTTCAAGTTCTGGGCCACCATCTCCATGGAAAACGCAAAGAAATATGGGAAAGCCTGTTAGAGAAGCTTAAAAGTATGCCAAGCAAAGAGGTCCATGATGTGATGAAGCTCAGTTATGATGATCTTGATCGGGATGAGAAAAAGATATTCTTAGATATTGCTTCTTTTTTTAAAGGGTTGAATTTGGAAGAGAATGATGTAAAACTACTATTGAAGGATCAGGGGAGTGAAACAATTAGAAGCATCACCACCAAGTTGTTATTGCTTAAGAAGCTGCAGTTAAGCCCTCATGTATTTTCTAAGATGAGCAAACTACAGTTTTTGGATTTTTATAGCAAGGGTCCCTGTTATTTACCACATGATGGAGGGAGTTTGTATCTTCCTGAAGGACTTGAGTCTTTCCCTGATGAACTAAGGTTTCTTCGTTGGGCATACTACCCTATGGAAGCCTTGCCAGCCCAGTTTTCTGCTGAAAATCTCATAGTACTCAGCTTGCCCAATAGCCGAGTGAAAAAACTTTGGCATCAAGAGCAGAATCTTGGAAGTTTAAGGATGATTGGACTTCAATGTTCCACACAATTAACTGAGTTACCAGACTTTTCGAATGCAACAAATGTTAAAGTGATCGATCTCCGTTCGAGTTCAAAGTTAATTCACATACATCCATCTGTTTTCTCTTTAGAGAAGCTCACTGATTTGGACCTTAGTAACTGCATTTCCCTTACAAGCCTTACAAGTGATACTCATCATTTAAGGTCCCTTCGCTATCTCTCTCTCCATGGCTGCACAGCACTGATGGAGTTTTCTGTTACTTCGATGAATATGGTGAGTCTGAATTTAGACCACACAGGGATCAAACAACTGCCTCCGTTGTTTGGAAATCAAAGAAAACTCGAAAAGCTGAGTCTAGTAAACAGTACTATTGAGTGCTTGCCCGAAAGCATTAAGCACCTTTTGAGGCTAAGAAGCTTAGATTTAAGGCATTGCAGGGAGCTTCAAACTCTACCGGAGCTTCCCCCGAACATCGAAAAGCTAAATGTTCAAGGCTGCATATCACTGAAGACGGTGTTGTTCCCTGTGACCGCAGCTGAACAAATGAAGGAAGAAAGGAAAAAGGTTTCATTCTGGAATTGTCTGGCGTTGGACAAACACACTCTTGAGGCCATTGGCTTGAATGCACAAATCAATATCATGAAATTTGCATATCAAGATTTGTCCAGATATGAAACTGACGGTTTTCTTGCTCATCAAGCCACCTATGTGTATCCTGGAAGCGAAGTTCCAGAGTGGTTGTTTTACAGAAGAACAAATGGTGATCACATTACCATTGATGTCCCCTTTGATTCAATCTTTTCCGATCAGTTAGGCTTTATTTTTGCCTTCATTGTTCCGGAAGTTGAATCTGAGGGTTTGTTTTTAAACTTTAGCATCAGTGGTGGTGGCAATGATGCAGATGAAGGGAAGAGTTTCAAGTTGCGCTTGGATAGGCCACGTCAGCGAATCGCATCGGACCACGTGTATCTGATGTATGACGCGGCATGCTCTAACTACCTAAATAGTAGAGCCAAATCTCAGTCTCAGCCATGGCTTGAAATCAATGTTAGTGTGGCATCACAGTACACGCAGTTGCTGTTGAAAGGAATTGGGGTGATGGTAGGGAATGCAGCACAATATCATAGTTTCCTTCAACAAATGAAATGGCTTGGCACAACTTCGGATACCCTTTTTGATCAGCCAATATACCGTAGAACAAGAGCAATGGATTCAGATACTTGTGAACCTTTATATCAAACTCGTTATCCTGAATTAGGGAATTTCTATGGTACCCGGGGGTTATTTCCAGAACAAGGGCACGGTTGGAGAGGGTGCCACTTATGTAGTGTTCCCACAACAACCCAAAGCTGA 3147 0.4064 MAHSSFFQSSQIAYVVFVCLLLILQLKGGVGTSSPGDAALKIKYDVFVSFRGPDVRRGFLGHLVDALSRKKIHAFVDDNIEVGDEIPKSLVGAIQASLISLVILSPNYASSHWCLEELAKIVECRENDGQFVLPVFFDVDPSDVRYQKGSYADAFVKLEERYDLVKIQRWRTALQKTANLSGLTSTKHGNDNGLLEEIIKNVKKILNHDQKYISEGLIGIGKSIALLESELNPELEDVRVFGIWGMGGLGKTTLAWEVFNSVRSQYEGSCFLRNVRENSAREGIISLKNKLYSELIGEDLKIDGSNGLPQFVEKRLGRMKVIIVLDDVSDFQQLKILFGTREHFGSSSRIIVTSRDKQVLHTEVDSTYQVKPLHFDESLRLFNLIAFKQKQHLEMEFHEQSKKVIEYAKGIPLVLQVLGHHLHGKRKEIWESLLEKLKSMPSKEVHDVMKLSYDDLDRDEKKIFLDIASFFKGLNLEENDVKLLLKDQGSETIRSITTKLLLLKKLQLSPHVFSKMSKLQFLDFYSKGPCYLPHDGGSLYLPEGLESFPDELRFLRWAYYPMEALPAQFSAENLIVLSLPNSRVKKLWHQEQNLGSLRMIGLQCSTQLTELPDFSNATNVKVIDLRSSSKLIHIHPSVFSLEKLTDLDLSNCISLTSLTSDTHHLRSLRYLSLHGCTALMEFSVTSMNMVSLNLDHTGIKQLPPLFGNQRKLEKLSLVNSTIECLPESIKHLLRLRSLDLRHCRELQTLPELPPNIEKLNVQGCISLKTVLFPVTAAEQMKEERKKVSFWNCLALDKHTLEAIGLNAQINIMKFAYQDLSRYETDGFLAHQATYVYPGSEVPEWLFYRRTNGDHITIDVPFDSIFSDQLGFIFAFIVPEVESEGLFLNFSISGGGNDADEGKSFKLRLDRPRQRIASDHVYLMYDAACSNYLNSRAKSQSQPWLEINVSVASQYTQLLLKGIGVMVGNAAQYHSFLQQMKWLGTTSDTLFDQPIYRRTRAMDSDTCEPLYQTRYPELGNFYGTRGLFPEQGHGWRGCHLCSVPTTTQS 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc13g00029 1048 ProSiteProfiles TIR domain profile. 42 206 IPR000157 GO:0007165
Stsc13g00029 1048 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 44 684 IPR044974 GO:0006952
Stsc13g00029 1048 Gene3D - 205 370 IPR027417 -
Stsc13g00029 1048 SMART till_3 43 180 IPR000157 GO:0007165
Stsc13g00029 1048 Gene3D - 373 455 IPR042197 -
Stsc13g00029 1048 FunFam Disease resistance protein (TIR-NBS-LRR class) 40 208 - -
Stsc13g00029 1048 Pfam TIR domain 43 208 IPR000157 GO:0007165
Stsc13g00029 1048 SUPERFAMILY Toll/Interleukin receptor TIR domain 41 182 IPR035897 -
Stsc13g00029 1048 Gene3D - 41 204 IPR035897 -
Stsc13g00029 1048 Gene3D Ribonuclease Inhibitor 456 687 IPR032675 -
Stsc13g00029 1048 Gene3D Ribonuclease Inhibitor 688 792 IPR032675 -
Stsc13g00029 1048 PRINTS Disease resistance protein signature 315 329 - -
Stsc13g00029 1048 PRINTS Disease resistance protein signature 240 255 - -
Stsc13g00029 1048 PRINTS Disease resistance protein signature 408 422 - -
Stsc13g00029 1048 PRINTS Disease resistance protein signature 639 655 - -
Stsc13g00029 1048 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 467 IPR027417 -
Stsc13g00029 1048 Pfam Leucine rich repeat 619 676 IPR001611 GO:0005515
Stsc13g00029 1048 Pfam NB-ARC domain 237 454 IPR002182 GO:0043531
Stsc13g00029 1048 SUPERFAMILY L domain-like 505 771 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc13g00029 Stsc-Chr13 150103 154853 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc13g00029 44 781 WRKY Transcription Factor Family AT4G12020 26.270 3.98e-49 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc13g00029 - - pvu:PHAVU_010G131900g 926.776