Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc13g00018 ATGAGTGGTGCGGCAGCTGAGGATGGTGATGATATTTACAGTCTTGTTTTGTGTGATAGGAATGATGCTGAGCTCATTGAAGAAATCATCAAATCAGTGAATACTAGGTTGAAATTTTTTAGCCAAGCTCACTCAAAAGGACTTTTTGGAATTGAAAAATCAATTTCTCGCGTTGAATCATTACTCCTCCAAGATCCAGAAAGCGTTCGAGTTATCCGAATCTGGGGAATAGGTGGCATTGGAAAGACAACAATCGCAGACCAAGTCTATCACCTTCTCCGCCATGAATACGAAGCCACTGTTTTTCTACGTAACGTAAGGGAAGTATCTCTTAGAAATGGAATCATCAACTTGAAGAACGAACTCTTCTCCGAACTCTTAGGCGAAGATCTCAAAATTGACATGCAAAATGGTTTGCCTACTTATGTTGAGAAGAGAATTGGGCGTATGAAGGTTCTTATTGTTCTTGATGATGTCAATCAGTCAGAGCAGTTTGAGACTCTGGTTGGAAAGCCGGAATCTTTCGGATCAGGGAGTAGAATTCTTGTAACTACAAGAGATAGGCAAGTGCTTGCGAAATATGCTCCTGCTAATGATACATTCAAGGTTGAACCATTGGAATTTGATGAAGCACTTCAGCTCTTCAATTCGATCGCATTTCAACAGAATCAAACTGAAAAGGAGTATATTGAGCTTGCAGAGAAAGTGGTGGCTCATGCCAAAGGAATTCCTGTTGTTCTCAAGACTCTGGCTCATCTGCTTCATGGAAAAGATAAGCAGTTTTGGAAAAGCGAATTGGAGAAGCTTGGCAAGATTCCAAATAAGAAGGTTTTTGATATAATGAAGCTGAGTTATGTTGATTTGGATGATGATCAGAAAGCAATACTTTTGGACATTGCATGCTTCTTTGATGGGATGCAGTTGAAAATCAAATACTTGGAGAGTTTGTTAAAGCATGGGGATTATCCAGTTCGTCCAGCATTGGAAAGACTTGAAGACATATCTTTCATAACCATTTCTAACGACAATGTAGTAACAATGCATGATATTGTACAAGAAATGGCCTGGGAGATTGTTCGCCGAGAATCCATTGAAGACCATGCCAACCATAGTCGATTATGGAATCCTGACGACATTTATCAAGTACTCGAAAATAATCAGGGGAGTGAAGTCATTAGAAGCTTAAACTTCAGCTATTCCAAAGCAAAAGTTAGGGGCATAGAGTTAAGCCCTCATGTATTTTCTAAGATGAGTAAGCTGCGATTTCTTGACTTTTATGGAGAACAAGACCTCTTAAAATTTCCTGAGGGTCTTCAACAGTTGCCAAGTCAACTAAGATACCTGCGTTGGACTTATTACCCTCTGAATTCATTACCAAATAAATTTTCTGCAGAGAAGCTAGTCATATTGGAATTACCTTATAGTGAAGTGGAAAAACTTTGGTATGGGATCCAGAATCTTGAGAAATTGAAGGTCCTTAAGGTTCCATATTCCTCACATTTGAAGGAGTTTCCAGACTTATCAAGGGCCAACAATCTTGAGATATTGGATCTCAAATATTGTCTTTCCTTGACTCATGTCCATCCGTCTATCTTCTCCCTCAAGAATCTTGAGACTTTGGATCTAAGCGGGTGCTCTTCACTTACCAGTCTTGAAACCGATGTTAACTTGACATCCCTTCATTATCTGAGCCTTTATCACTGCAAAAGCTTGAATAGATTCTCTCTGATTTCAGAAAACATGACAGAACTTGATTTGCGACACACATCCATCCAAGAATTGCCCTCATCCTTTGGATATCAAAGCAAACTGAAAAAGCTTCATCTAGCAAACTCTGAAATAAAGAGGATGCCTGATAGCGTCAAGCTTCTCACTAGTCTAAAATATCTTGACATAAGTGATTGCAAGAATCTTCAAACTCTACCAGAGCTTCCACTTTCCATAGAAACATTAGATGCAGATAACTGCACAAAATTGAAGGCCGTATTTTTCCCAAATATTAGTGAACAGCTGAAGGAAAATAAGAAAAGGGTTTTGTTCTGGAACTGCTTGAAGTTAGGAAAGCAATTTCTGAATGATGTGGCATTGAATGCTCATATCAACATGGTGAGATTTTCAAACCAATATTTGTCTGCGCTAGAACATGATAATGTAGACAAATCTAATGAAGAACCTGAAGCCTCTTACATTTATCCTGGGAGCATTGTTCCAAAGTGGTTTGAGTATCAAACAACAACAGATCACCTAACTGTTGATCTCTCTTCTGCTCCATATGAACCCAAATCGGGCTTTATTTTATGCTTCATTGTTCCTGCAGTACCATATGAGGGCTTAAGGTTGATGTTTACAATCAGTGGTGACGACGAAGACGGTGGCAACGGGTTCATCAGGTTGGACGTGTACAGACCAAGGAAGTTGATTTCATCGGATCATGTGATTCTAATCTACGACCAAAGTTGCACTAACTTCCTAAATGAAAGAGGTAAAGTTCGAAGAATGTTTAAAATCAAGGTGTCAGCTGTTTCACGATCGATTGCACCAGAGCAAGTGGCAGTGGAGTTGAAAGGGTTTGGAGTGCACCAAGTAAACCCATTAGAGTATCCAAGTTTCATTAGTTTTCTTAAAAAAATGGAAATGTTGGGTTATCATACTCCTGCTACTTTGAACCCGGTTTTACAGTGGAAATGTGAAATCGAATTTGTTCGTGGATTGGAGCTCACAATTGAGGATGATATTCAAGATCTTTCTTACATATGGTGTCGTTTCAGGTTATTATGA 2778 0.3913 MSGAAAEDGDDIYSLVLCDRNDAELIEEIIKSVNTRLKFFSQAHSKGLFGIEKSISRVESLLLQDPESVRVIRIWGIGGIGKTTIADQVYHLLRHEYEATVFLRNVREVSLRNGIINLKNELFSELLGEDLKIDMQNGLPTYVEKRIGRMKVLIVLDDVNQSEQFETLVGKPESFGSGSRILVTTRDRQVLAKYAPANDTFKVEPLEFDEALQLFNSIAFQQNQTEKEYIELAEKVVAHAKGIPVVLKTLAHLLHGKDKQFWKSELEKLGKIPNKKVFDIMKLSYVDLDDDQKAILLDIACFFDGMQLKIKYLESLLKHGDYPVRPALERLEDISFITISNDNVVTMHDIVQEMAWEIVRRESIEDHANHSRLWNPDDIYQVLENNQGSEVIRSLNFSYSKAKVRGIELSPHVFSKMSKLRFLDFYGEQDLLKFPEGLQQLPSQLRYLRWTYYPLNSLPNKFSAEKLVILELPYSEVEKLWYGIQNLEKLKVLKVPYSSHLKEFPDLSRANNLEILDLKYCLSLTHVHPSIFSLKNLETLDLSGCSSLTSLETDVNLTSLHYLSLYHCKSLNRFSLISENMTELDLRHTSIQELPSSFGYQSKLKKLHLANSEIKRMPDSVKLLTSLKYLDISDCKNLQTLPELPLSIETLDADNCTKLKAVFFPNISEQLKENKKRVLFWNCLKLGKQFLNDVALNAHINMVRFSNQYLSALEHDNVDKSNEEPEASYIYPGSIVPKWFEYQTTTDHLTVDLSSAPYEPKSGFILCFIVPAVPYEGLRLMFTISGDDEDGGNGFIRLDVYRPRKLISSDHVILIYDQSCTNFLNERGKVRRMFKIKVSAVSRSIAPEQVAVELKGFGVHQVNPLEYPSFISFLKKMEMLGYHTPATLNPVLQWKCEIEFVRGLELTIEDDIQDLSYIWCRFRLL 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc13g00018 925 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 574 IPR044974 GO:0006952
Stsc13g00018 925 ProSiteProfiles Stonin homology domain (SHD) profile. 355 512 IPR012320 GO:0006897
Stsc13g00018 925 SUPERFAMILY L domain-like 407 686 - -
Stsc13g00018 925 PRINTS Disease resistance protein signature 146 160 - -
Stsc13g00018 925 PRINTS Disease resistance protein signature 532 548 - -
Stsc13g00018 925 PRINTS Disease resistance protein signature 240 254 - -
Stsc13g00018 925 PRINTS Disease resistance protein signature 71 86 - -
Stsc13g00018 925 SUPERFAMILY "Winged helix" DNA-binding domain 275 384 IPR036390 -
Stsc13g00018 925 Gene3D - 206 289 IPR042197 -
Stsc13g00018 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 299 IPR027417 -
Stsc13g00018 925 Gene3D - 29 204 IPR027417 -
Stsc13g00018 925 Pfam C-JID domain 732 837 IPR045344 -
Stsc13g00018 925 Pfam NB-ARC domain 52 271 IPR002182 GO:0043531
Stsc13g00018 925 Gene3D Ribonuclease Inhibitor 576 754 IPR032675 -
Stsc13g00018 925 Pfam Leucine Rich Repeat 466 485 IPR011713 -
Stsc13g00018 925 Gene3D Ribonuclease Inhibitor 380 575 IPR032675 -
Stsc13g00018 925 Pfam Leucine rich repeat 580 635 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc13g00018 Stsc-Chr13 84108 87454 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc13g00018 4 643 WRKY Transcription Factor Family AT4G12020 34.962 9.13e-96 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc13g00018 - - adu:107464771 1379