Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc13g00016 ATGGCTTGGGAGATGGGGACAGAGGCCATTAGAAGCATAAGCTTCAACTATTCAGAAACAACCAGTGAGGACATCCAGTTGAGCCCTGGGGTATTTTCTAAGATGAATAACTTGAAATTTCTTGACTTGTATGGAAAGGATGATCTCTTAAAGTTACCTCAAGGGCTTGAATCATTGCCAAGTGGAATAAGATATCTTCGTTGGACATATTACCCTCTTAAATCTTTACCGGAGAAATTTTCAGTAGAAAACCTTGTTATATTGGAGTTACCATATAGCCAAGTTGAAAAACTTTGGCATGGTGTCCAGAATCTTGTGAATATGAAGGTCCTTAAGGTCCCTTATTCCACGCAATTGAAGGAGATTCCAGACTTGTCAAAGGCCACAGATCTTGAGGTAATGGATCTTAGATACTGTTTAAATTTAACTGGTGTGCATCCTTCTGTCTTCTCTCTCAGCAAGCTTGAGACGTTGGATCTGAGTTGGTGCTCTTCCCTTACCAGTTTCAAAAGATTGAAGAAATTCTCAGTGACATCAAAAAATATGATTGAACTGGATTTACGACACACATCCATCCAAGAACTTCCCCCATCGATTGGATATCAAAGTAAACTTGAGAAGCTTCATTTAGCAAACTCTGACATCAAGGGCTTGCCCACAAGCATCAAGCATCTCACAAGTTTGAAATATCTTGACATAAGTGGTTGCAAGAGCCTTGAAGCTTTGCCAAAACTCCCCCTCTCCTTGGAAACTTTAGATGCAGAGGACTGCACGTCATTAAAGACAACGCTATTCCCAACCATCAATGAACAAATGAAGGAGAAAAAGAAAAGGGTTATGTTCTGGAATTGTTTGATGTTGCGTGAACAATTTCGCAATGCAATTGCCATGAATGTTCATATCAACATCGTGAGATTTGCTAACAGATATTTGTCCAAGCTAGAACAAGATCATGTTGGAGATTCCAACGATCATGGTGAAGCACCCGAAGCCTCCTATGTGTACCCTGGGAGCACCGTTCCAGAGTGGCTAGAGTTTCAGACAACAACCAATAACCTTTACAGTAGATCTCTATTCTACTCCATATGCTCCTAA 1095 0.4055 MAWEMGTEAIRSISFNYSETTSEDIQLSPGVFSKMNNLKFLDLYGKDDLLKLPQGLESLPSGIRYLRWTYYPLKSLPEKFSVENLVILELPYSQVEKLWHGVQNLVNMKVLKVPYSTQLKEIPDLSKATDLEVMDLRYCLNLTGVHPSVFSLSKLETLDLSWCSSLTSFKRLKKFSVTSKNMIELDLRHTSIQELPPSIGYQSKLEKLHLANSDIKGLPTSIKHLTSLKYLDISGCKSLEALPKLPLSLETLDAEDCTSLKTTLFPTINEQMKEKKKRVMFWNCLMLREQFRNAIAMNVHINIVRFANRYLSKLEQDHVGDSNDHGEAPEASYVYPGSTVPEWLEFQTTTNNLYSRSLFYSICS 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc13g00016 364 Pfam Leucine Rich Repeat 84 103 IPR011713 -
Stsc13g00016 364 Gene3D Ribonuclease Inhibitor 11 175 IPR032675 -
Stsc13g00016 364 Gene3D Ribonuclease Inhibitor 176 287 IPR032675 -
Stsc13g00016 364 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 261 IPR044974 GO:0006952
Stsc13g00016 364 Pfam Leucine Rich Repeat 154 166 IPR001611 GO:0005515
Stsc13g00016 364 Pfam Leucine rich repeat 184 237 IPR001611 GO:0005515
Stsc13g00016 364 SUPERFAMILY L domain-like 26 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc13g00016 Stsc-Chr13 80467 83126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc13g00016 4 243 WRKY Transcription Factor Family AT4G12020 40.942 6.35e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc13g00016 - - adu:107464771 484.567