Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc13g00004 ATGGTTGAAGGTGATGGGAGGTTAGTGCCTGCAACAGATGATGAAGTAATGGAGATGGAGGATTTTCTTGAGCATGAAAACAGTGAAATGCGTGTTGTTGCGGACACTGGGCAAAGTTTGGAGTGCATATCAATTGAAAGATCATCTTCTGGGAAACTTCGATTGGAGTGTCCAAAAGGCACTGCCGATGCAGATTTTGGGAAACTAAATGCAAAATTACAGATGTTGCAAAAGGTCAAACAAGAAGAGAGACTTCGATTGTCTTGTGAATCACCCATTCGTTCTTGTGCAAAGAAGGAAAGCCAGTGTTCTGATGATAAATTTCCTGTCATGGTTGAGAATAATCAATCTGATACTCCACACCAGGAAATTCCTTCTTTAGCATCAAGCTTAAATTATACACACAGTAATCAATCTGGGAGTGTTGATCAGTGTTCCAGACCTTCGGAAGGAGTGATGGAAAGTGGATCATCTGCTTCTGCTGTCTATTCCGCTTTGAAGCCCGATTTTTCAATGTTTGATGGAGAAATATGCTTGGACAAGCTATCCATCAGAGAACTTCATGAACTGTTTAAAGTAACTTTTGGTCGGGAAACTACTGTGAAAGATAAGCAGTGGCTGAAACGGAGGATTGCCATGAGTTTAACAAACTCGCGTGATGTTTCAGCAACAACTTTCATTATTAAAGATAATAAAATAATAAGAAAGTGTGAGGACAGTTCTGGAAATGGAGATGCTGAAAATGTAATTTCCATGGACAATGCAGCTGGAGAAGCAGATATTAACTTCAAGGACTCATCTGCTTTGGAGGGTTGTGTAACTGAAGATAATCAAGTTGTTTCTGAAACAAAACCTGGAAAACATGATATGGAAAATGGATTGGGAGTTGAGGATCATCAAAGAGCTGCAAAAAGAGTTAGGAAGCCCACCAAGAGATATATTGAAGAGCTCTCTGAAAATGAATCTAGAGACCCCAACCCCACCCCCACCCCCACCCCCACGGCGATGTTAAGTTCGAGTAGAAATTTTGGACCTGGACTTTCTACAACTTCATATGTGAGGCTTTCTAGGGATACTTGTTCAGAGATGAGAACATTTATCACCAGGGTAGACTCACTAGGAGGTTCTGATGTTCAAGTTCCTTGTGTTTCTCGGGTTCGAAGAAGTCATCCAAGGAAAGATATTACATCACTTACGAAATTCCTTCCAATTGACCTGGCCAAGGATGCAAAATTAGATAATAAGGCTCTTGGAGAAAATGGTTCTTGTGCTGCTAGTGAGAGTCTAGAAAAAGTCCTAAAGGCAAGATCCACACCTGGAAAGTTTCAGCCCATGAGAGCAACTGAGACTTTGCTTTCTTCTGAACCTGAGAAAGAACAGCAGCTTCCAGGAGTAAGCACAAACGAGCCACAGCAGGAATCAAGGCCAAAAAGGGCGGATCCACCCAGTCATCCTTCAGAGGACAGTATAGTCACTGTTCCCACTGCTAAAGGTGGAATGAGGAGGAAACATCATCGAGCTTGGACTCCTGTTGAGGTAATGAAGTTGGTTGACGGTGTATCGCGGTGTGGCGCAGGGAAGTGGTCGGAGATCAAACGGCTCTCCTTTTCATCACACTCGTATCGTACCTCTGTTGATCTTAAGGACAAGTGGAGGAATTTGCTCAAGGCTAGCTTTGCGCAGACCCCTGCAGATGAAGGGATGAATGTGCGGAAGCATGGTACGACTCCAATACCGGAGACGATTTTGGTACGAGTGCGAGAGCTTGCAGGGATGAATTCTCAGGCACCTCCAAATTTTAGCTCAAGAAACTTAGTAGCTGGTGCGGGGAATGCACACGGACATAGATCAGGGTACTTGTAG 1863 0.4353 MVEGDGRLVPATDDEVMEMEDFLEHENSEMRVVADTGQSLECISIERSSSGKLRLECPKGTADADFGKLNAKLQMLQKVKQEERLRLSCESPIRSCAKKESQCSDDKFPVMVENNQSDTPHQEIPSLASSLNYTHSNQSGSVDQCSRPSEGVMESGSSASAVYSALKPDFSMFDGEICLDKLSIRELHELFKVTFGRETTVKDKQWLKRRIAMSLTNSRDVSATTFIIKDNKIIRKCEDSSGNGDAENVISMDNAAGEADINFKDSSALEGCVTEDNQVVSETKPGKHDMENGLGVEDHQRAAKRVRKPTKRYIEELSENESRDPNPTPTPTPTAMLSSSRNFGPGLSTTSYVRLSRDTCSEMRTFITRVDSLGGSDVQVPCVSRVRRSHPRKDITSLTKFLPIDLAKDAKLDNKALGENGSCAASESLEKVLKARSTPGKFQPMRATETLLSSEPEKEQQLPGVSTNEPQQESRPKRADPPSHPSEDSIVTVPTAKGGMRRKHHRAWTPVEVMKLVDGVSRCGAGKWSEIKRLSFSSHSYRTSVDLKDKWRNLLKASFAQTPADEGMNVRKHGTTPIPETILVRVRELAGMNSQAPPNFSSRNLVAGAGNAHGHRSGYL 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc13g00004 620 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 500 559 IPR017930 -
Stsc13g00004 620 MobiDBLite consensus disorder prediction 316 343 - -
Stsc13g00004 620 MobiDBLite consensus disorder prediction 435 504 - -
Stsc13g00004 620 Pfam Myb-like DNA-binding domain 507 555 IPR001005 -
Stsc13g00004 620 CDD SANT_TRF 506 556 - -
Stsc13g00004 620 PANTHER MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED 2 601 - -
Stsc13g00004 620 SUPERFAMILY Homeodomain-like 502 569 IPR009057 -
Stsc13g00004 620 MobiDBLite consensus disorder prediction 443 472 - -
Stsc13g00004 620 ProSiteProfiles Myb-like domain profile. 508 555 IPR001005 -
Stsc13g00004 620 Gene3D - 495 603 - -
Stsc13g00004 620 SMART sant 504 557 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc13g00004 Stsc-Chr13 12385 18311 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc13g00004 Myb_DNA-binding 2.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc13g00004 - - adu:107464756 1027.7