Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc138g00018 ATGGTGGTTGATCACGACGGAAGCGGTGGCGGTCACACTTATTCACAACAAGAAATGGAAACAGTGAGAGTGAAATCAGAACAAGTTACGTCTCCCTGCTACTACTTCGATCAAAACGACGACGTTTCATCTGATAAAAACAAGAGTAACTCAGAAGTGACGGAAGAAGAAGGAGAAGAAGAAGAGCTTCGCGTGAAACAAGAGTTTGCTGATGAAGCCGCCGTTAACGTTAACGTCTCCTCGTCTTCGTCGTCGGTCGAGTTGCCGAAACCGATGGAAGGCCTTAACGAGGCGGGTCCGCCTCCGTTTCTAAGGAAGACTTTCGAGATGGTGGAGGATCCGGAAACCGACCCGATTGTCTCGTGGAGCCATAACCGCGATAGCTTCATCGTTTGGGACTCTCATGAGTTCGCCAAAGTGCTTCTTCCAAAGTATTTCAAGCACAGCAACTTCTCCAGCTTCATTCGCCAGCTCAATACCTATGGGTTTAGGAAGGTTGATTCAGATCGTTGGGAGTTTGCAAACGAAGGATTCCAAGGAGGGAAGAAGCATTTGCTGAAGAACATAAGGAGGAGAAGCAAGTACAACAAACTGCATCAAGGAGCTTTCATCAACCCCTCAAAGCCTTGCCTTGAGGCTGAAGTTGAGAAGCTCAAGAAGGATCAAAACATACTCAAACTTGAAATTCTCAAGCTCAGACAACAGCAAGAGAATTCACACATTCATCTCACAACCGTTCAGGATCGGATTCAGAGCGCCGAGACAAAGCAGTATCAGATGATATATTTCCTCACCAGAATGGCCAAAAAGCCATTGTTTGTGGAACAGCTCCTGCAAAAGGTTAAGAGGAAGAGGGAGATCGATGGCGCCGACACGTTCAAGAGGCCGCGCAGATTGCTGGAACCAGCCCCTAGTGTTAGTGGTGTTGATTATAGATCCCAACAAGGTCATGAACAATTTGCTACATTGCAATCTGAACTTGATGGACTATTGTCTGAGAATGTGATGTGCAATAGCAATAAGATGGATCACACTGTTCCTTCTCCTCTGGAAGGTGAATTATGCAGCAAGGTACAAGGCCTTAGAAGCTATGGTTCTTCAAGGGGGAGTGATGTACCTTCTGCTTATCATGCTATGTCAGAGAATCTATTGGCAGAAAATAATGGTGGTGCTGATGAAGAACTTGATGTTAATGACTCAAATATTTATCTTGAGTTAGAGGATTTGATTACTAAGCCAACAGATTGGGTTGGTTCTGCATCTGCTGGTGGCTTGGTGGGGCAAACTAGTTGA 1293 0.4563 MVVDHDGSGGGHTYSQQEMETVRVKSEQVTSPCYYFDQNDDVSSDKNKSNSEVTEEEGEEEELRVKQEFADEAAVNVNVSSSSSSVELPKPMEGLNEAGPPPFLRKTFEMVEDPETDPIVSWSHNRDSFIVWDSHEFAKVLLPKYFKHSNFSSFIRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRSKYNKLHQGAFINPSKPCLEAEVEKLKKDQNILKLEILKLRQQQENSHIHLTTVQDRIQSAETKQYQMIYFLTRMAKKPLFVEQLLQKVKRKREIDGADTFKRPRRLLEPAPSVSGVDYRSQQGHEQFATLQSELDGLLSENVMCNSNKMDHTVPSPLEGELCSKVQGLRSYGSSRGSDVPSAYHAMSENLLAENNGGADEELDVNDSNIYLELEDLITKPTDWVGSASAGGLVGQTS 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc138g00018 430 SMART hsfneu3 99 192 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc138g00018 430 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 89 316 IPR027725 -
Stsc138g00018 430 SUPERFAMILY "Winged helix" DNA-binding domain 99 192 IPR036390 -
Stsc138g00018 430 PRINTS Heat shock factor (HSF) domain signature 103 126 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc138g00018 430 PRINTS Heat shock factor (HSF) domain signature 154 166 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc138g00018 430 PRINTS Heat shock factor (HSF) domain signature 141 153 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc138g00018 430 MobiDBLite consensus disorder prediction 1 64 - -
Stsc138g00018 430 FunFam Heat shock transcription factor 1 96 193 - -
Stsc138g00018 430 Gene3D - 96 193 IPR036388 -
Stsc138g00018 430 MobiDBLite consensus disorder prediction 10 40 - -
Stsc138g00018 430 Pfam HSF-type DNA-binding 103 192 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc138g00018 430 ProSitePatterns HSF-type DNA-binding domain signature. 142 166 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc138g00018 430 MobiDBLite consensus disorder prediction 76 101 - -
Stsc138g00018 430 Coils Coil 215 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc138g00018 Stsc-Chr138 82351 84356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc138g00018 89 416 HSF AT2G26150 41.018 5.28e-79 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc138g00018 HSF_DNA-bind 1.3e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc138g00018 K09419 - gmx:100818430 504.982