Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc138g00012 ATGGATGGCATATTCAACCTCCCTGAAGCCACCAGGAGCGACTTTCTCCGCTCTCTCATCAACACTTTTGGTTGCACATACATATGTCTCTGGCACTTCCACTCATCATCAAAGTGTAGTAATTTATTGTTCTTGGATGGGATTTACAACAACAACCAATCATCGAGCACTAACGTAGCTGAAGAAACGCTTTTCAAGCTATATCAGCGTTTAAGCTTTGATGGTGTCAATGATGAGTGTGTTCCTGGGGCAGCTTTCAGGAGCCACATGCCCTACTTACAGCTTCAACAATTGGATCTTCTACGACTCGCATCTGCAGTTATTCAAACACAATTCTATCTGGAAGCAAGGATTGAGACAGCTATTTTCATGGGGTGCAGCCAAGGGGAAATTGAGCTTGGTTTCTCCACTCTCCCTCAAAATGACATTGAAGCAGCAGTGAAGAGTTTATTCCCACAAGATTTTTCAAGACAGCAGCAGCAGCTTCACGAAGCAACGACAATGGAAGATCCAGCTTCATCCTCTTCATGTTCTTGGTTATCCACTACTACTGGTAGCCTCAGCCCTACTCATGAATTCTCCTCCTTCTTCTTCAATGGAAGCGGCGGAGGAGTACTCTTACCTGCACCAGAGGGTGAGCAAGAAGCAATAATAAGAGCAATCCTTCATGTTATTTCTTCTTCTTCTTCTTCTTCAACTAATTCTCATCATCATCAACAACAACAACCACCGTATAACAGTGCTTTCAGGATATATAAACCTCCTCCAGTGCCTTCAGTAACAATACATCGCAGCAGTAGTAGTAAGCATAGCTTAATGAAGAGATCAATAGCATTCTCTAGAACCCTAAATCTAATGAGAATTAGAGAACGCTTTCATTTTCAACATCATCATCATCATCGCCTCATTATTGGTAATCAGAGTAACAATCATAAGCATTTCCATCACGTCCTATCAGAAAGAAGAAGACGTGAAAACGAAAGTCAATGTTTCCAGGAACTTAGGGCACTACTTCCTCCAGGAACTAAGAGACATAAAGCATCAGTTCTTGTAGCGGCAAAGGAGGCATTGAAATCTTTGGTCGCTGAAATTGAAAAGCTTAACATAAGAAATCAAGAATTGGTGAAAACACTAGTTGGCTCATCATCATCAAGTTATGTAAATGTTATTAGTAATAACTCCTCTTCCTCATCATCATCATTATTGAACATTGCGGTGTCGCATGTGCTGGCGGGGTCGAGCTCATCGGAAGAGAGAACGGTGGATTTGCAAGTCGCCGTCAGATCTCATGATCATCAATCTGATGATATAGTGATTCGGTTGCTGGAATTCTTGAAAAGCCTTCACAACCAGCTGAGCTTGGTTTCCATGGCCACAAACTCTACTACTAATACTACACAAGGGACAACACTTAATCAAATCAACTTCAGAATAAGGATTCTTCATGGAAGTGAATGGGACGAGGCTGGCTTCGTGGAAGCAGTGAGAAGAGTTGTGGCTGACTTGTTACTGCCTTATTGA 1521 0.4208 MDGIFNLPEATRSDFLRSLINTFGCTYICLWHFHSSSKCSNLLFLDGIYNNNQSSSTNVAEETLFKLYQRLSFDGVNDECVPGAAFRSHMPYLQLQQLDLLRLASAVIQTQFYLEARIETAIFMGCSQGEIELGFSTLPQNDIEAAVKSLFPQDFSRQQQQLHEATTMEDPASSSSCSWLSTTTGSLSPTHEFSSFFFNGSGGGVLLPAPEGEQEAIIRAILHVISSSSSSSTNSHHHQQQQPPYNSAFRIYKPPPVPSVTIHRSSSSKHSLMKRSIAFSRTLNLMRIRERFHFQHHHHHRLIIGNQSNNHKHFHHVLSERRRRENESQCFQELRALLPPGTKRHKASVLVAAKEALKSLVAEIEKLNIRNQELVKTLVGSSSSSYVNVISNNSSSSSSSLLNIAVSHVLAGSSSSEERTVDLQVAVRSHDHQSDDIVIRLLEFLKSLHNQLSLVSMATNSTTNTTQGTTLNQINFRIRILHGSEWDEAGFVEAVRRVVADLLLPY 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc138g00012 506 Coils Coil 350 377 - -
Stsc138g00012 506 CDD bHLH_AtbHLH_like 316 367 IPR045239 -
Stsc138g00012 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 311 360 IPR011598 GO:0046983
Stsc138g00012 506 SMART finulus 317 366 IPR011598 GO:0046983
Stsc138g00012 506 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 309 373 IPR036638 GO:0046983
Stsc138g00012 506 Pfam Helix-loop-helix DNA-binding domain 316 360 IPR011598 GO:0046983
Stsc138g00012 506 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 108 501 IPR044658 -
Stsc138g00012 506 Gene3D - 308 381 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc138g00012 Stsc-Chr138 66655 69433 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc138g00012 1 502 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 34.892 1.88e-73 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc138g00012 HLH 3.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc138g00012 - - ahf:112776694 552.362