Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1389g00003 ATGTCAAGCAGCAGGAACACTCATTGGTGTTACAGTTGCAGGAGGCCAGTTCGACTAGGACGGCGAGATACGGTTTGCCCTAGCTGCAATGAGGGATTTATTCAGGAACTTAATGATATGGTGCATGTTAACCCTCTAGAATTCTTCGGACTAGATAACAATGAAGAGCATGACCAAAGGTTTGGACTTATGGAAACTTTCTCTGCCTTTATGCGGCAGCGAGTGGCCGATAGAAGTCATAGCCATGATATCAGGGCACGATCGAATTCTATTTCGGAACATGGTCCAGGTTTTGCTCCTTTGTTGATATTTGGTGGTCAGATTCCTTTTAGATTATCTGGACATGGTGGTTTCGAGGCTCTCTTTAATGGGACTCCTGGTGTTGGTCTTACCCGGGGAAACACAGGCGATTATTTTATTGGTCCTGGACTTGAAGAATTGTTTGAACAGCTCTCGGCTAATACCCGGCAAGGGCCTCCACCAGCATCCAGATCCTCTATAGATGCAATGCCTACTATCAAAATTACACACAGGCATCTTCGTTCTGATTCACATTGTCCGGTGTGCAAAGATAAATTTGAGGTGGGGACTGAAGCAAGACAAATGCCATGTAACCATATGTACCACTCAGATTGTATTGTTCCATGGTTGATCCAGCATAACTCCTGCCCTGTTTGCCGTCAAGAATTGCCGCCACAAGGATTGAGTAGCAACCGAGGCTCGAATGGCCGAAGTAGAAGCACCTTTAGTGGCAGCAGCAGCAGTAGGAGTGGTAGGGAGAACCAGGCTAGGCGAAATCCATTTTCGTTTTTGTGGCCTTTCCGTGGTTCTAATTCTAGCAGCAATGATAGAGCAACCGGAAGCAGCTCGCCGACGCCATCTTTCCCTGATAGTAGTCATCACACTGAGTATTCTGGGTGGCCATTTGAATGA 933 0.4673 MSSSRNTHWCYSCRRPVRLGRRDTVCPSCNEGFIQELNDMVHVNPLEFFGLDNNEEHDQRFGLMETFSAFMRQRVADRSHSHDIRARSNSISEHGPGFAPLLIFGGQIPFRLSGHGGFEALFNGTPGVGLTRGNTGDYFIGPGLEELFEQLSANTRQGPPPASRSSIDAMPTIKITHRHLRSDSHCPVCKDKFEVGTEARQMPCNHMYHSDCIVPWLIQHNSCPVCRQELPPQGLSSNRGSNGRSRSTFSGSSSSRSGRENQARRNPFSFLWPFRGSNSSSNDRATGSSSPTPSFPDSSHHTEYSGWPFE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1389g00003 310 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 81 231 - -
Stsc1389g00003 310 SMART ring_2 186 226 IPR001841 -
Stsc1389g00003 310 MobiDBLite consensus disorder prediction 233 310 - -
Stsc1389g00003 310 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Stsc1389g00003 310 MobiDBLite consensus disorder prediction 272 301 - -
Stsc1389g00003 310 MobiDBLite consensus disorder prediction 233 264 - -
Stsc1389g00003 310 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Stsc1389g00003 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 233 IPR013083 -
Stsc1389g00003 310 CDD RING-H2_RNF126-like 186 227 - -
Stsc1389g00003 310 Pfam Ring finger domain 185 227 IPR001841 -
Stsc1389g00003 310 FunFam E3 ubiquitin-protein ligase RING1-like 149 233 - -
Stsc1389g00003 310 SUPERFAMILY RING/U-box 166 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1389g00003 Stsc-Chr1389 12432 14901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1389g00003 121 231 C3H Transcription Factor Family AT5G01980 43.478 8.04e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1389g00003 K11982 - gmx:100787523 522.316