Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc137g00005 ATGCCTACAACACACACAATCCAACCTAAACCTGCCTGCAACAGGGCAGTAGTGGAGGCGTTTAGGAGGTTTGAAGAGAGATCGTTCACAATCTTCGTGGACAATCTGCCTCAAGGAGTAGCAGTTCAAGACCTTTGGGAGCTCTTTAGCGATCAAGGACAGGTGGCGGATGTCTTCGTCTCAAGAAAGAGGAGAACCTATGCTGCCCACAATTTTGCGTTCGTTCGGTTTGCATTCAGGAACCATGCATTGAGAGCGATCCCCAACTTGAATGGGTGGCTTTACCACGGGTATGCCATGAAAATCTCTGAAGCAAAATTCAAGAGAGGGACCCAAGAGAATAAGAATATGCCGTCGAGAGGTGACCACCATCAAAAGGAGACAGGTAGACGGTTAGTGGTGAATGGTTCAGGAGATGGAAATGATAGGAACAATATTCACAAGGGAAGCGGTGTATCGTATAGGGACGTAGTGGTGGGAAGAGAGAATGGCGATCTTAGCGGGGAAAGGAAGGCTGATATGGAGAATCAAGGGCAAGAGGTGACAAAGGAAAAACCAACACTACTAGGGAATATCAGTGGTGAGAAGGATGCTTGCATGATGGAAAAGTTGAAATTCTGCTTGATTGGGGAATCAGTAATCCCTTTGATAGCGGAGGATGTCATTCCATCGTTATTCAAGGATTGGGTGGAGCTGAGGGAAGTCAAAAGGATGGGGAACTACAAGATGGCCCTATTCTTTGATTCTGGATGGCTTTAA 759 0.4664 MPTTHTIQPKPACNRAVVEAFRRFEERSFTIFVDNLPQGVAVQDLWELFSDQGQVADVFVSRKRRTYAAHNFAFVRFAFRNHALRAIPNLNGWLYHGYAMKISEAKFKRGTQENKNMPSRGDHHQKETGRRLVVNGSGDGNDRNNIHKGSGVSYRDVVVGRENGDLSGERKADMENQGQEVTKEKPTLLGNISGEKDACMMEKLKFCLIGESVIPLIAEDVIPSLFKDWVELREVKRMGNYKMALFFDSGWL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc137g00005 252 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 30 160 - -
Stsc137g00005 252 MobiDBLite consensus disorder prediction 109 130 - -
Stsc137g00005 252 SUPERFAMILY RNA-binding domain, RBD 25 123 IPR035979 GO:0003676
Stsc137g00005 252 Gene3D - 18 156 IPR012677 -
Stsc137g00005 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 31 99 IPR000504 GO:0003723
Stsc137g00005 252 MobiDBLite consensus disorder prediction 109 150 - -
Stsc137g00005 252 SMART rrm1_1 30 103 IPR000504 GO:0003723
Stsc137g00005 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc137g00005 Stsc-Chr137 20124 20882 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc137g00005 22 102 Eukaryotic Initiation Factors Gene Family AT3G11400 37.037 1.36e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc137g00005 K12891 - aip:107633172 84.3445