Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1378g00001 ATGGAATTGGAATCTGGTGGCAATAGCCTCTACCCAGGTCAGAGATTATCAAGAAACCAAACCCTAGTTTCCTCTGATCAGCTCTTTGAAATGGGTTTCTTCTCACCACCAGGTAATAACTCTGATAACTATTACATTGGAATTTGGTATACAAATCTTCCACAAAAAACGGTAGTTTGGGTAGCCAACAGGGATCAACCTGTATCTAATCCATACACTTCATGGTTAGAACTTGGCAAGCATGGCAACCTATCTCTATACACCTCCCATGGTCCTCAAGTTTGGTCAACAAACACAAACTTGTTGGGTTCTTCTGATTCGGTAGTTGCTACTCTTGGGGATGATGGAAACTTTTTTATAACAAACTCGTCTGGATTTCATACATGGCAGAGTTTTGATTACCCAACAGATACCTTGCTGCCTGGTGCATATTGGAGATATGACGACAACAGAGGTATTAAAATGGTACTGAAATCTTGGGCAGGTGTTAGTGACCCATCAACTGGCCGCTTCTCTGCTGAGGTAACTGGACTTTCCTCTGATTTCCATGAGGCTCAACTGTTGCTAATGGATGGTTTCAATCATACTAAGCTCTGCATGGATCTTCTTTCTACTAACCTTTGGTCAGATGACTTCAATGTCAATATTGAAATTTTCTCCGACATGGACCAATACTCCTCCTATGTTGAGATGTCATATTACTTTTGCTATACAGAGTGTATTGCTAGATATGTGCTAGGCGTATCTGGAAATCTCAAACTTCGTGTGTGGTTGAGTTCCTTGCAAGAGTGGGGTACCATTGACATGGACCTAACATGTTACTCTCGCAGCAGTGGAAATGAAAAGAATAGAAGAAGCAATGGCAATCAAAGTGAAAAGACTTCAAAGAAGGATACTACTTGGGTTATTGTAGGGGCAGCAGTTGGGCTTGCTAGTGTGTTGCTTGCTATTGTCATTTTGCTGATAAGGCTGTGGAAGAGAGGCAATACCACTTCATCTAATGCAATGGGAGGAGATACACTGAAGCAGTACAAGTACAAAGATTTGAGAAACGCAACTAAAAATTTCACCGAGAAACTAGGAAAGGGTGGTTTCAGCATTGTTTACAAAGGGGAATTCCCTGATTCGACATTTGTAGCTAGGGAGTCTAATGTCTTAGATTGGGGAACTAGGTACAATATTGCTCTTGGAACTGCCAAAGGATTAGCTTACCTACACGAGCATTGTAGAGACTGCATCATCCATTGTGACATCAAGCCGGAGAACATTTTGTTGGATGCTGATTTCAATCCTCAAGTCGCAGATTTTGGCTTGGCGAAGCTTCTAGGCCGAGACTTCAGTCGGGTGCTTACAACAATGAGAGGCACAAGAGGCTATCTCGCACCAGAGTGGTTCTCTGGTGTTCCAATCACTGCAGAAGTTGATGTGTATAGTTATGGTCAAGTCCTTCTTGAGATAATTTCAGGTAGAAGGAACATGGATCTAGTAAATGACGATCTAGCTAGTTATTTTCCGGCAATTGTTTTCAATGCATTGAACAATGGGGAGGATGTTCTGCCTTTGGTAGATTCCAAACTACATGGAAAATTCAGCGCAGAAGAGGTTACTAGAGCATGCAAGGTTGCTTGTTGGTGCATTCAAAATGATGAGAATGATAGACCAACAATGAAAGAGGTTGTTCAAGCTTTGGAAGGACATCTTGATGTAGGTATTCCTCCAATTCCACGGTTTTTCCTGTCCTTAGCAGAACCTTCTGTCCGAAAAGGTTATCTGAAGGAAAGCAAGGATTATAGTACATCAAGCACACTACCTTCAAGTTTCATCTTTCAACCATCA 1836 0.4178 MELESGGNSLYPGQRLSRNQTLVSSDQLFEMGFFSPPGNNSDNYYIGIWYTNLPQKTVVWVANRDQPVSNPYTSWLELGKHGNLSLYTSHGPQVWSTNTNLLGSSDSVVATLGDDGNFFITNSSGFHTWQSFDYPTDTLLPGAYWRYDDNRGIKMVLKSWAGVSDPSTGRFSAEVTGLSSDFHEAQLLLMDGFNHTKLCMDLLSTNLWSDDFNVNIEIFSDMDQYSSYVEMSYYFCYTECIARYVLGVSGNLKLRVWLSSLQEWGTIDMDLTCYSRSSGNEKNRRSNGNQSEKTSKKDTTWVIVGAAVGLASVLLAIVILLIRLWKRGNTTSSNAMGGDTLKQYKYKDLRNATKNFTEKLGKGGFSIVYKGEFPDSTFVARESNVLDWGTRYNIALGTAKGLAYLHEHCRDCIIHCDIKPENILLDADFNPQVADFGLAKLLGRDFSRVLTTMRGTRGYLAPEWFSGVPITAEVDVYSYGQVLLEIISGRRNMDLVNDDLASYFPAIVFNALNNGEDVLPLVDSKLHGKFSAEEVTRACKVACWCIQNDENDRPTMKEVVQALEGHLDVGIPPIPRFFLSLAEPSVRKGYLKESKDYSTSSTLPSSFIFQPS 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1378g00001 612 CDD B_lectin 16 135 IPR001480 -
Stsc1378g00001 612 SMART serkin_6 354 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1378g00001 612 Pfam D-mannose binding lectin 57 160 IPR001480 -
Stsc1378g00001 612 Gene3D Transferase(Phosphotransferase) domain 1 381 569 - -
Stsc1378g00001 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Stsc1378g00001 612 Gene3D - 3 132 IPR036426 -
Stsc1378g00001 612 SUPERFAMILY Protein kinase-like (PK-like) 341 586 IPR011009 -
Stsc1378g00001 612 SMART blect_4 13 135 IPR001480 -
Stsc1378g00001 612 SUPERFAMILY alpha-D-mannose-specific plant lectins 43 154 IPR036426 -
Stsc1378g00001 612 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 370 573 - -
Stsc1378g00001 612 ProSiteProfiles Bulb-type lectin domain profile. 7 133 IPR001480 -
Stsc1378g00001 612 Gene3D Phosphorylase Kinase; domain 1 328 380 - -
Stsc1378g00001 612 PANTHER OS07G0415500 PROTEIN 7 257 - -
Stsc1378g00001 612 ProSiteProfiles Protein kinase domain profile. 279 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1378g00001 612 Pfam Protein kinase domain 390 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1378g00001 Stsc-Chr1378 11253 13268 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1378g00001 386 573 Receptor kinase-like Gene Family AT5G20050 48.205 1.52e-48 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Stsc1378g00001 Pkinase 1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1378g00001 - - ahf:112737678 749.199