Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1374g00002 ATTCTCTCTGCTGGAGATGTTGCAGACAGAAAACTTAAGCGTAAATTGGAGGAGCCACCTATCATGGATAATGATCCAGAGCTGGTGCTTACTCTAAGCCTCAGCAATGAAAGGCATGAGCCATCTTCCTGCAATTTCTCATCTAATTCCCAAAATCCTGTGGAAAATTCGAATCAAGAACGCTTGTTCGCTTGCAAATTTTGTTATAAGAAGTTTGCAAGTTCTCAAGCCTTAGGAGGACATCAAAACGCTCACAAGCGTGAGAGGATGCTCTCAAAAATGAACAAAGTGTTCAAGATGAAAACCAAACCTCTCAATTGTCATCACCCATGGCCATACGCAACCATGGCAAATCATCTACCCTTTGAAGATGCACACATGCACCATGTGGCTGAGATGCCTTCCAACATTACCATGCCTTTTCCATATTTTGATTGGATCTAA 444 0.4212 ILSAGDVADRKLKRKLEEPPIMDNDPELVLTLSLSNERHEPSSCNFSSNSQNPVENSNQERLFACKFCYKKFASSQALGGHQNAHKRERMLSKMNKVFKMKTKPLNCHHPWPYATMANHLPFEDAHMHHVAEMPSNITMPFPYFDWI 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1374g00002 147 SUPERFAMILY beta-beta-alpha zinc fingers 59 90 IPR036236 -
Stsc1374g00002 147 Pfam C2H2-type zinc finger 63 87 - -
Stsc1374g00002 147 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 90 IPR013087 -
Stsc1374g00002 147 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 25 123 IPR044246 GO:0009788
Stsc1374g00002 147 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Stsc1374g00002 147 Gene3D Classic Zinc Finger 42 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1374g00002 Stsc-Chr1374 10766 11211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1374g00002 61 141 C2H2 Transcription Factor Family AT1G24625 38.272 6.71e-14 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1374g00002 - - aip:107620206 150.984