Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc136g00016 ATGAACTCCAACAACACCACTTCTAATCCTCAGTCAATGGTGACACCAACGCCAACTGCCACAACTACTGCCACTGCCACCGCCACTGATGCCTCTGCCAAGAAGGTCAGAAAGCCTTACACCATTACCAAGTCCAGAGAGAGCTGGACTGATGAAGAACACGACAAGTTTCTAGAAGCTCTTCAGCTATTTGACAGAGATTGGAAGAAAATTGAAGATTTTGTAGGATCAAAAACAGTTATTCAGATCAGAAGCCATGCCCAAAAATACTTCTTGAAAGTTCAAAAGAATGGAACAGTAGCACATGTGCCTCCTCCTCGCCCTAAGCGCAAAGCTGCACATCCCTACCCACAAAAGGCTTCAAAAAATGTTTTGATGCCACTGCCAGCATCTATTGCTTATGCTCCTTCGACAAATGCCCTTGCACCTGGGTATGCCACATGGGATGAAGCTTCTCTGCTGGTGAACCCCGGGTCAAATAAATCATCAACCTGTCAAGATGAACTCAGCAATCTTCATGGAATTGAAGCTGATATTGGATCAAAGGGGATAACACAGATTAGTAACTGCAGTCTTAATGGTGTCGGGAACTCAACTAGAAAGCTGTTGACTTCTGAGATACCAAAGCAAGGGAAACCAGCGCCAGTTATTCATGGTTTGCCAGATTTTGCTGAAGTCTACGGCTTCATTGGGAGTGTTTTTGATCCAGATACAAATAACCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGCTAATGAGAAACCTCACTGTCAACTTGTCTAGCCCTGAATTTGAGCCCATCAAGAATGTATTGTCAACATATGATATCAGTGCCATGACGGTAGGAGTTACGGCAGCAGGAATCGATATCAAGCAGCAACCGAATGACCTATCATGTCAAACTGCTTAA 933 0.4362 MNSNNTTSNPQSMVTPTPTATTTATATATDASAKKVRKPYTITKSRESWTDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLMPLPASIAYAPSTNALAPGYATWDEASLLVNPGSNKSSTCQDELSNLHGIEADIGSKGITQISNCSLNGVGNSTRKLLTSEIPKQGKPAPVIHGLPDFAEVYGFIGSVFDPDTNNHVQKLKEMDPINFETVLLLMRNLTVNLSSPEFEPIKNVLSTYDISAMTVGVTAAGIDIKQQPNDLSCQTA 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc136g00016 310 ProSiteProfiles Myb-like domain profile. 41 91 IPR001005 -
Stsc136g00016 310 Gene3D - 49 96 - -
Stsc136g00016 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 44 93 IPR006447 GO:0003677
Stsc136g00016 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 95 IPR017930 -
Stsc136g00016 310 ProSiteProfiles SANT domain profile. 44 97 IPR017884 -
Stsc136g00016 310 CDD SANT 48 91 IPR001005 -
Stsc136g00016 310 PANTHER SWI/SNF COMPLEX-RELATED 15 268 - -
Stsc136g00016 310 Pfam Myb-like DNA-binding domain 46 91 IPR001005 -
Stsc136g00016 310 SMART sant 45 93 IPR001005 -
Stsc136g00016 310 FunFam protein REVEILLE 6 isoform X1 48 96 - -
Stsc136g00016 310 MobiDBLite consensus disorder prediction 1 38 - -
Stsc136g00016 310 MobiDBLite consensus disorder prediction 1 30 - -
Stsc136g00016 310 SUPERFAMILY Homeodomain-like 40 96 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc136g00016 Stsc-Chr136 83645 88766 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc136g00016 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc136g00016 - - gmx:100797466 484.182