Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1367g00001 ATGTGGTGCCTGGATGAAGTAGCCAAGATCATGGAGTGTGCGGAGGAGAAGGGAAGAAGAAGACGAAGAGTTTTGCCGATCTTTTACAAAGTAGAACCATCGGATGTGCGCCTTCAGAAGAATGAATATGAAGCAGCAATGATTAAGCATGAAAATGGCAGAAACTCTCACAAGGTGGAAGCATGGAGGTCGGCTTTGTCTTCAATAGGCAACCTGAGTGGACACCATTGTACTGCCGACATGTGTGAAGGTGACATTATTGACAAAATTGTTGAAGAGGTGTTACGAAACCTTCCTCCTGAGCCTCTCCTTATTCACAACCTTGCTGAATTTGATTCTCAATTAGAACAAGTGAAATCACTTTTAGACGTTGAATCTAGTGATACTCTTTGCATGTTGGTAATTATTCATGGAGATGGTGAAACAATAAGGAAAACAAGGTTTGTTGTGGAATTATATAACAAAATCAGGCATCAATTTGAAGCTGCTAGTTTTCTTGCCAATGTCAGTGAAAAATCAAAGGAAAGTGTTAGTGGTCTAACAGGTCTCCAAAAGACACTTTTATTTGAGATGGGTGAGGAAGGAGCAACATTCATGATAGGTAGCACATTTAAGGGATCCTCTGAAATTAAACGAAGGTTAGGACATAAAAGAGTTCTTCTAGTGCTAGATGATATTGATGATGTGCAACAATTGCATACATTGGTAGGAGGGGGTGACTGGTTTGGTCTTGGTAGCAGGATAATCATCACAACAAGAGATGAAAATTTGGTCAATAAGCATGTGTTGGATGGTGTTCAGATTAAGAAATATTGCATCGGCAGAGGTGAATTCGAAAGCATGGAACTTGCTAAACGAAATCATAGACAAAGGGATGTAGAGGAAGGGGATGTGATGATAGGATTTGAGAATAACTTGAGCACTATTCTTAAGCAGCTTAAGGAAAATGATCTACCTACCAATGTTGTTTCCATAATTGGTATGGGTGGTTTAGGTAAGACAACCATTGCTAGAAAGATTTATGATGACTATGACGTCAAGAAGTTGTTCTCTTGCCGTGCATGGAGCTGTGTTTCTAAGAACTATGTAGCAAGGGAAGTTTTGTTGAGCCTTTTCCGTTGTCTGAAGTCTCCGAACAAACCCGTGTCCGAATTTGAAAACTCAAGTGAGGAGGATATAAGGGAGGAATTGAGAGAATATATGAAGCAGCAAAAGTATTTGGTAGTTCTTGATGATCTTTGGGATCCTCTTGTGTGGGATGACATAAAACGAGCCCTTCCAAATGGCAAGACTGGTAGCAGAATACTTATAACTAGTCGAAATAATGAGGTGGCAAACTACACAAGCCCAAGGCCTCCCCATTACCTTCCATTTCTAAATAATGAAGAAAGTTGGGAACTGTTCTGTAACAAAGTGTTTTGGGGTAGAAAATGCCCTTGTGATCTAGAGCCTATTGGTAAATCAATGGTTGAAAGGTGTGGAGGCTTACCAATTGCTATAATCACTTTAGCAGGACTTGTTTCTAAGAAGAAAAGGTCACAAAGAGGGTGGTTGCGTGTCAAAGGCCATGTCAATTGGCATCTTGCTCAGGATAATACAAAAGTCAAGGATGCATTGAAGCTCAGCTACGACGATTTGCCTACAAGATTGAAGCCGTGTTTTCTGTATTTTGGGATCTTTCCTGAGGATTATAGTATCTCTGCTAGGAAGTTGGTCCAGTTATGGATGGCCGAAGGATTCATTCAACCGGAAGAATGTGGAATACCATATGCGCCGGAACCAGAAGACGTTGGCGATGAATACTTAGACCAGCTGGTGGATCGTTGCTTGGTACAAGTGACCAAGAGGAGGAGTGACGGCGGTGTCAAATATTGTCAAATCCATGATCTCTTACATGACTTTTGCATATCAAAGAGCAAAGTTGATGAGTTTCTAGAGATTCGTACAGAGTCTAATATTCATTCCTTGAGCGTCCTCGAAGCAGCAGGAGTATTAACAAGATCAGCACCTAGTGATTTGAAGGTAATGATCAACCTAAAATACTTAAGAATAGAAAGAAGTGCTTGGTGCAATGCTATAGACATTCCAGATTGTATATGGAGCCTTTGTAATTTAGAAACACTAGATCTAAGGGATTTGATGGAGACAAACACGACCTCTAGTCGAATCTGGAATCTCAAGAGGCTGAGACATCTTTACATGCTATTGACCCTTGAGCTACCGTCGAATGGCTCGCCATTGTTGAATCTACAAACTCTAAGTGAAGTAATTCTTGATCAGCAATTAACAATAGCATTGAACAATGGTTGGTTGGTTAATTTGAAGAAGTTAGGTCTTCAGTTGCTTCAGCAGTATACACCCCAAGAATATTTTTTGAGCCTGCTCTGCCTAAGTAACCTGTCTAAGTTGCATGTAGAATGCATTGATTCAAGCTATTTACATGTATCTGCTTTTCCATCCAATCTTACCAAGGTTACCTTAAAATTATTTGTTGATGAGAACCACAGTATTATGAATGCTCTAGCACATCTTGCTAACCTCCATGTTTTGAAATTAATAGAAGGTGTCTTGCCAGATTCTCTTAATTGTGGCACCACAGAGTTCCCACAGCTTCAAGTGTTTCTGATGATAGACGTATGTGTCAAAAGGTGGAGATTAGAGAAAGGTGCAATGCCTCGGCTTCAATGTTTAGTCATCCGTGATTGCCTTTTCCTTGAACAAGTGCATGTTGTTGATCCATCTCATGAATTGAAAACAACACTCGAAATTGGGCTTCACTACCATTGCAGATTTTATACATATTGCAATTTTGTGATTCATAATTCAATAATATACCTTCGAGGAGTTTGGGACTACCGGCGTAACCGAAAGTGCCAAGACGGAAAGTTGGAAGTTTATGTGAAAGATTCATTGAGATCATCTGAGATAAATCCGTATAGGATCATCCTTAATTATATCTTAATCATTTGCGGATTTATTGAGCAAGATGTTGGGCCACATAATGTTGGGCCGGGTTTATCGAACGAAGGGCTTGATACGTGTATCTTTAGGGGATTTGAGTCATCTGGGCTCAATATCCGGAATAGTTGCCCCGAACTCAAGAAGGCCGACGTTTCCGACGTTCCGGGCTTCGTGAGTTGTCAAACTTGCCCCGAAGGTCGTTTCGTCGTGATGCCGAGTCATCAAAGCTTCTTCCGGAAGCTTCTGAAGATGAGGCGTCAGTTGGATTTGATGGCTGACATCATTTATTGGAGAACGTGGAGAAAGTGGGCCTTTGATATTCACGCTTTTGATGATGGGAGTTAA 3306 0.4077 MWCLDEVAKIMECAEEKGRRRRRVLPIFYKVEPSDVRLQKNEYEAAMIKHENGRNSHKVEAWRSALSSIGNLSGHHCTADMCEGDIIDKIVEEVLRNLPPEPLLIHNLAEFDSQLEQVKSLLDVESSDTLCMLVIIHGDGETIRKTRFVVELYNKIRHQFEAASFLANVSEKSKESVSGLTGLQKTLLFEMGEEGATFMIGSTFKGSSEIKRRLGHKRVLLVLDDIDDVQQLHTLVGGGDWFGLGSRIIITTRDENLVNKHVLDGVQIKKYCIGRGEFESMELAKRNHRQRDVEEGDVMIGFENNLSTILKQLKENDLPTNVVSIIGMGGLGKTTIARKIYDDYDVKKLFSCRAWSCVSKNYVAREVLLSLFRCLKSPNKPVSEFENSSEEDIREELREYMKQQKYLVVLDDLWDPLVWDDIKRALPNGKTGSRILITSRNNEVANYTSPRPPHYLPFLNNEESWELFCNKVFWGRKCPCDLEPIGKSMVERCGGLPIAIITLAGLVSKKKRSQRGWLRVKGHVNWHLAQDNTKVKDALKLSYDDLPTRLKPCFLYFGIFPEDYSISARKLVQLWMAEGFIQPEECGIPYAPEPEDVGDEYLDQLVDRCLVQVTKRRSDGGVKYCQIHDLLHDFCISKSKVDEFLEIRTESNIHSLSVLEAAGVLTRSAPSDLKVMINLKYLRIERSAWCNAIDIPDCIWSLCNLETLDLRDLMETNTTSSRIWNLKRLRHLYMLLTLELPSNGSPLLNLQTLSEVILDQQLTIALNNGWLVNLKKLGLQLLQQYTPQEYFLSLLCLSNLSKLHVECIDSSYLHVSAFPSNLTKVTLKLFVDENHSIMNALAHLANLHVLKLIEGVLPDSLNCGTTEFPQLQVFLMIDVCVKRWRLEKGAMPRLQCLVIRDCLFLEQVHVVDPSHELKTTLEIGLHYHCRFYTYCNFVIHNSIIYLRGVWDYRRNRKCQDGKLEVYVKDSLRSSEINPYRIILNYILIICGFIEQDVGPHNVGPGLSNEGLDTCIFRGFESSGLNIRNSCPELKKADVSDVPGFVSCQTCPEGRFVVMPSHQSFFRKLLKMRRQLDLMADIIYWRTWRKWAFDIHAFDDGS 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1367g00001 1101 PANTHER DISEASE RESISTANCE PROTEIN RP 297 902 IPR044974 GO:0006952
Stsc1367g00001 1101 FunFam Probable disease resistance protein At1g63360 543 637 - -
Stsc1367g00001 1101 Pfam TIR domain 2 98 IPR000157 GO:0007165
Stsc1367g00001 1101 FunFam Probable disease resistance protein At1g61300 283 451 - -
Stsc1367g00001 1101 Gene3D - 458 547 IPR042197 -
Stsc1367g00001 1101 Gene3D Ribonuclease Inhibitor 637 921 IPR032675 -
Stsc1367g00001 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 275 IPR027417 -
Stsc1367g00001 1101 Gene3D - 1 96 IPR035897 -
Stsc1367g00001 1101 ProSiteProfiles TIR domain profile. 1 98 IPR000157 GO:0007165
Stsc1367g00001 1101 SUPERFAMILY L domain-like 650 947 - -
Stsc1367g00001 1101 Gene3D - 548 636 IPR036388 -
Stsc1367g00001 1101 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 557 IPR027417 -
Stsc1367g00001 1101 Gene3D - 97 264 IPR027417 -
Stsc1367g00001 1101 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 74 IPR035897 -
Stsc1367g00001 1101 Pfam NB-ARC domain 304 544 IPR002182 GO:0043531
Stsc1367g00001 1101 Pfam NB-ARC domain 114 269 IPR002182 GO:0043531
Stsc1367g00001 1101 Gene3D - 287 450 IPR027417 -
Stsc1367g00001 1101 PRINTS Disease resistance protein signature 700 716 - -
Stsc1367g00001 1101 PRINTS Disease resistance protein signature 322 337 - -
Stsc1367g00001 1101 PRINTS Disease resistance protein signature 400 414 - -
Stsc1367g00001 1101 PRINTS Disease resistance protein signature 493 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1367g00001 Stsc-Chr1367 7268 13272 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1367g00001 8 254 WRKY Transcription Factor Family AT4G12020 29.555 3.82e-20 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1367g00001 - - aip:107625624 1495.72