Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc135g00015 ATGTCTGGTCATGAAGCAGCTACCACTTCCTCCGCCACCAATTACTTCACTCCACCACCACCACCACCACCACCAAGTCAAGTTAATAAGAAGAAGAGAAGCCTCCCTGGTAACCCAGATCCTGATGCTGAAGTAATAGCGTTGTCACCAAAGACTCTGATGGCGACAAACAGATTCCTATGTGAGATCTGCGGGAAAGGGTTTCAGAGGGACCAGAATCTGCAGCTGCACAGAAGAGGGCACAACTTGCCGTGGAAGCTGAAGCAGAGAACGAAGACGGAGGTGGTGAGGAAGAAGGCGTACGTGTGCCCGGAGGCAACTTGCGTGCACCATGATCCCGCGAGAGCACTGGGGGACCTCACGGGGATCAAGAAGCACTTCAGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGAAAAGTGCTCTAAGAAGTATGCCGTTCAATCCGATTGGAAAGCCCACTCCAAAACCTGCGGCACTCGCGAGTACCGATGCGACTGCGGTACCCTCTTCTCAAGGAGGGACAGTTTTATAACACACAGAGCTTTTTGTGATGCGCTTGCAGAAGAAAGTGCGAGAGGTGTGACACCTGTAGCACCATCTCATTCTCATGGATTCCAATTGAAACAAGAGCAGCAGCAGCAAACAAGTTTCAGTGGCATGCCAGCGTGGCTTGGAAGTTCAATCACCACCGTTGATTTCTCGGGAACTGCTCAACAAGTAGTAGAGGTAGAGCACCCAAATCCAAACCCTAACCCTAGCGTAATTGGACCCACTGCAGCCGCAGCAGCTTCACCGCACATGTCAGCCACTGCGTTGCTGCAGAAAGCAGCGCAGATGGGAGCAACCACCACCACCACCTCCATGAGGTCCCACGAGGGTCACGTGTCTGCGAATTCCAACAGCAACAGTGCCACTACTACTTTTGGTTTGAATTTGTCGTCACGTGATGACCCTACGACTACTACTGCTCCTCCTGCCATGGCTTTTGGCCACCACGGATTCTTCCCGGCTCCTACTGGAGGTTCTGCGTCTCTACTCCAGCACGTGATGAACTCTTTTGAAGGTCCCAGTTTTGAGGAAGCTTTCGGTGGGATTCCGATTCCGATTCCCAACGCAAAGAAAGATAATCAGCATGAGGAGGGATTGACGAGGGATTTCTTGGGGCTTAGGCCTCTTTCTCATAGCGATATCCTCACCATTGCTGGTATGAGTAACTGCATCAACTCTTGTTCTTCTTCTTCCTCACATGATCAACTCCAAAAGCCATGGCAAGGTTAG 1281 0.5144 MSGHEAATTSSATNYFTPPPPPPPPSQVNKKKRSLPGNPDPDAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTKTEVVRKKAYVCPEATCVHHDPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARGVTPVAPSHSHGFQLKQEQQQQTSFSGMPAWLGSSITTVDFSGTAQQVVEVEHPNPNPNPSVIGPTAAAAASPHMSATALLQKAAQMGATTTTTSMRSHEGHVSANSNSNSATTTFGLNLSSRDDPTTTTAPPAMAFGHHGFFPAPTGGSASLLQHVMNSFEGPSFEEAFGGIPIPIPNAKKDNQHEEGLTRDFLGLRPLSHSDILTIAGMSNCINSCSSSSSHDQLQKPWQG 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc135g00015 426 Gene3D Classic Zinc Finger 114 193 - -
Stsc135g00015 426 MobiDBLite consensus disorder prediction 1 42 - -
Stsc135g00015 426 MobiDBLite consensus disorder prediction 15 29 - -
Stsc135g00015 426 Gene3D Classic Zinc Finger 55 82 - -
Stsc135g00015 426 FunFam protein indeterminate-domain 12-like 38 107 - -
Stsc135g00015 426 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Stsc135g00015 426 SMART c2h2final6 136 156 IPR013087 -
Stsc135g00015 426 SMART c2h2final6 101 131 IPR013087 -
Stsc135g00015 426 SMART c2h2final6 59 81 IPR013087 -
Stsc135g00015 426 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Stsc135g00015 426 FunFam protein indeterminate-domain 5, chloroplastic-like 114 193 - -
Stsc135g00015 426 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 408 IPR031140 -
Stsc135g00015 426 SUPERFAMILY beta-beta-alpha zinc fingers 58 156 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc135g00015 Stsc-Chr135 80952 83659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc135g00015 2 413 IDZ Gene Family AT1G55110 49.773 2.63e-123 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc135g00015 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc135g00015 K25870 - gmx:100808344 452.595