Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc135g00014 ATGAGCAAAAGGAACACCACCACCACAACCTCATCATCCTCAACCTCACAGGCTTGCGCTGCTTGTAAGCACCAACGTAGGAAGTGTGGTCCTAACTGCATTCTCGCACCATATTTTCCTCACGATCGGCAAAAACAATTCCTTAATGCTCATAAATTGTTTGGTGTTGGCAGAATGACTGATCTCATTAAACCCCTTAATCCTTCTGACAGAAACATTGCCATGGAAACCATCATCTACCAAGCTGAAATGCGTGCCTATGATCCTGTTGGCGGTTGTTTTAGGTTAATACAACACCTTCAATCTCAGATTGAGTACTACCAAGCTGAGCTTCAACTTGTTCTTCATCATCTCGCCCTCTTAAAAACTCAAGCTCAAGCGCAGCAGCAATCTTTAGATTGCGAAGGGATTCAAGAGGATCAATATTATGAAGCTACTAACATGGATAGCAATAATAGTTCAAGCATTACTCAAGAAGTGGATCTTAATGCATGGATGATGCAAAACTTGCAAACACCTGGGTTGTTATCACCTTTGACATTAAACAATGAAAATGAGAATGTTAGAGTTCTTGATGATAATAATGGCTATATTTATGATCCGAAGCCTATGGTTGACCTTGATTTTAAAGAAACAAATCCAGATCATCAAACACTAGTTGAGGGCATGCATTCAGGGATGAAGCTAGTTTAA 693 0.4012 MSKRNTTTTTSSSSTSQACAACKHQRRKCGPNCILAPYFPHDRQKQFLNAHKLFGVGRMTDLIKPLNPSDRNIAMETIIYQAEMRAYDPVGGCFRLIQHLQSQIEYYQAELQLVLHHLALLKTQAQAQQQSLDCEGIQEDQYYEATNMDSNNSSSITQEVDLNAWMMQNLQTPGLLSPLTLNNENENVRVLDDNNGYIYDPKPMVDLDFKETNPDHQTLVEGMHSGMKLV 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc135g00014 230 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Stsc135g00014 230 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 15 151 - -
Stsc135g00014 230 Pfam Lateral organ boundaries (LOB) domain 18 114 IPR004883 -
Stsc135g00014 230 ProSiteProfiles LOB domain profile. 17 118 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc135g00014 Stsc-Chr135 70030 70816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc135g00014 17 163 AS2 family AT3G13850 50.667 5.87e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc135g00014 LOB 5.7e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc135g00014 - - adu:107461308 319.316