Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc135g00011 ATGCCCTCTCCCTCCCCAAGAATTTCACCTCTAGGTTCATCATTGAATAAGATAAAGACTCCACCACCAGCATATGCTTTGGTTCTGCCACCTCCACCACCTAATAAGGATTGCATGATGATGACTTGCTCAGAGCCATTGACAAATACACCTCCTGGATCACCTTGTGGTTGTGTGTGGCCACTTCAAATTAAAATCTGCATCAGCATTGCAATATACAAGTTCTTTCCATTGGTTTTCGAGCTAGCCGAGGAAATTGCAGCCAGTCTTTTGTTGGACAGCAACCAGGTTCGCATTGTCGGAGCTGATGCAGCAAATCATCAACTAGAGAAAACCACTGTTCTCTTAAATTTGGTACCTCAAGGAGTTAGGTTTGATGATACAACAGCTTTCTTGATATACAAGAAATTCTGGGACAGGGAACTTCTCACTGATGCTTCCCTTTTTGGTGCCTATGAAGTACTCTATGTTCATTATCCAGGTCTTCCACCATCTCCACCTTCAAATCCTTTTGATGCTTCTGGTATAGTTGAACCAGATGCTGTTGGTAATGATGGGAGTTTAATAAAGCCTTTAGGAGTTGATGTCTCTAATAAGAAGAAAAAAGAAGGAAATAATGGTGAAAGAACGGTTGTTATGATCATGCTGTCATGTTTTGCAGCTTCTGTTCTCTTCATTGGAGTTACTTGGCTTTGTCTATTGAAATTCCATTGTCCTGCCCATGAAACTGAACAACCTCCAGATGTTAAAACTGCAAAATCTTTCAAAAGTTCAGGCACTGCTAGGTCTTACGAGAACATGCTGAATTCTAGATCAACATCAACCAATTCTGGAACAATAGCATATGCAGGATCAGCTAAGATATTCACTTTGAATGAAATAGAGAAAGCAACAAATAGCTTCAGTTCTACAAGAATATTAGGAGAAGGTGGCTTTGGCCTTGTTTACAAAGGAGGCCTAAATGATGGAAGGGATGTTGCAGTGAAGATTCTCAAAAGGGATGACCGGCATGGTAGCCGCGAGTTTTTAGCCGAAGTTGAGATGCTTAGCCGACTGCACCATAGAAATTTAGTTAAACTGATAGGTATATGCATTGAGAAACAGAATCGTTGCCTTGTCTATGAGCTTGTGCCTAATGGAAGTGTAGAATCCCACTTACATGGTTCAGACAAGGTAACAGGTCCACTCGATTGGGATGCACGGATGAAGATTGCACTCGGCGCTGCTCGAGGATTGGCTTATCTGCATGAAGATTCAAATCCATGTGTCATACATAGAGACTTCAAGTCCAGCAACATCTTGTTGGAACATGACTTCACACCCAAGGTATCAGATTTCGGATTGGCTAGAACAGCACTTGATGAGGGAAACCAGCACATATCCACACATGTTATGGGGACATTTGGGTATCTAGCTCCTGAATATGCAATGACAGGACATGTTCTTGCGAAAAGTGATGTCTACAGCTATGGAGTAGTGCTCCTAGAGCTCCTAACAGGGAGAAAGCCTGTGGACTGGTCGCGACCACCCGGTCAAGAATGCCTTGTTGCTTGCGTTCGTCCGCTTCTCACTAGCAAGGAAGGTTTGGAGATGATCATAGACCCAAACATAAAGAACAACATTTCTCTTGACAGCGTACTAAAAGTCGCAGCGATTGCATCCATGTGTGTGCAAGCAGAAGTCACTCAACGCCCTTTCATGGGTGAAGTTGTGCAGGCCTTGAAGCTGGTATGCAGTGAGTTTGAGGAAACAGGCTATGGAAGATCAGCGAGTTTTCGAGATGATGTACAGGCCTTAAATTTGTCACAGCCTTAA 1815 0.4314 MPSPSPRISPLGSSLNKIKTPPPAYALVLPPPPPNKDCMMMTCSEPLTNTPPGSPCGCVWPLQIKICISIAIYKFFPLVFELAEEIAASLLLDSNQVRIVGADAANHQLEKTTVLLNLVPQGVRFDDTTAFLIYKKFWDRELLTDASLFGAYEVLYVHYPGLPPSPPSNPFDASGIVEPDAVGNDGSLIKPLGVDVSNKKKKEGNNGERTVVMIMLSCFAASVLFIGVTWLCLLKFHCPAHETEQPPDVKTAKSFKSSGTARSYENMLNSRSTSTNSGTIAYAGSAKIFTLNEIEKATNSFSSTRILGEGGFGLVYKGGLNDGRDVAVKILKRDDRHGSREFLAEVEMLSRLHHRNLVKLIGICIEKQNRCLVYELVPNGSVESHLHGSDKVTGPLDWDARMKIALGAARGLAYLHEDSNPCVIHRDFKSSNILLEHDFTPKVSDFGLARTALDEGNQHISTHVMGTFGYLAPEYAMTGHVLAKSDVYSYGVVLLELLTGRKPVDWSRPPGQECLVACVRPLLTSKEGLEMIIDPNIKNNISLDSVLKVAAIASMCVQAEVTQRPFMGEVVQALKLVCSEFEETGYGRSASFRDDVQALNLSQP 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc135g00011 604 Gene3D Transferase(Phosphotransferase) domain 1 377 591 - -
Stsc135g00011 604 CDD STKc_IRAK 307 575 - -
Stsc135g00011 604 PANTHER OS01G0750732 PROTEIN 30 589 - -
Stsc135g00011 604 Gene3D Phosphorylase Kinase; domain 1 272 376 - -
Stsc135g00011 604 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
Stsc135g00011 604 Pfam Protein tyrosine and serine/threonine kinase 304 574 IPR001245 GO:0004672|GO:0006468
Stsc135g00011 604 FunFam receptor-like serine/threonine-protein kinase ALE2 274 376 - -
Stsc135g00011 604 FunFam Receptor-like serine/threonine-protein kinase ALE2 377 592 - -
Stsc135g00011 604 ProSiteProfiles Protein kinase domain profile. 301 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc135g00011 604 SUPERFAMILY Protein kinase-like (PK-like) 276 574 IPR011009 -
Stsc135g00011 604 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc135g00011 Stsc-Chr135 57730 60592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc135g00011 35 598 Receptor kinase-like Gene Family AT5G56890 59.549 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Stsc135g00011 PK_Tyr_Ser-Thr 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc135g00011 - - gmx:100814040 875.159