Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc135g00003 ATGAGCCGCTACGACAGCCGCTCCGCCGACCCCGCTTCGTATCGTGACCGAAGAAGCGATTCGGGGCTAGGAGGGCCTCCAGCTTCAGCTTCAGCTTCCAGCAGAAGGGATTACGATGACGGTGGGGCCGCCTCCCCCAGGAAGCTCAATTTGGACGGCTTGCCCCATTTCGAGAAGAATTTCTACCATGAATCGCCCTCTGTTAGGGCAATGACCGACTCCGATGTTGACGAGTACCGCCTCCGCAGGGAAATCACCGTTGAAGGCCGTGACGTCCCCAAACCTGTCAAGTCCTTTCACGATGTTGGCTTTCCAGAATATGTACTGCAAGAGATTAAGAAAGCCGGCTTTGTCGAACCTACGCCTATTCAGTCTCAGGGTTGGCCTATGGCTTTGAAAGGGCGCGATCTGATCGGAATTGCGGAAACAGGGTCAGGGAAGACGCTTGCTTACTTGTTGCCTGCCATAGTTCATGTAAATGCTCAGCCAATTCTAGATCCTGGGGATGGACCAATTGTGTTAGTTTTGGCCCCTACTCGTGAACTTGCCGTCCAAATACAACAGGAGGCTACTAAATTTGGTGCGTCGTCAAGGATTAAGAGCACATGCATCTATGGTGGGGTTCCGAAGGGGCCTCAGGTGCGTGATCTACAGAAAGGCGTTGAGATTGTAATTGCCACTCCGGGAAGGTTAATTGATATGCTTGAGTCAAATCATACTAACTTGCGGAGGGTCACATACCTAGTATTGGACGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAGATAAGGAAGATTGTCTCACAGATTCGTCCAGACCGTCAGACTCTGTACTGGAGTGCTACCTGGCCAAAGGAGGTTGAACAATTGGCAAGGCAGTTCCTTTATAACCCATACAAAGTAATTATAGGTTCTCAAGATTTAAAAGCTAACCATGCTATACGACAATATGTTGACATTGTTCCCGAAAAGCAGAAATATGACAAATTGGTGAAGCTGCTGGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGGATACCAAGAAGGGATGTGATCAGATCACTAGGCAGCTCCGCATGGATGGTTGGCCCGCACTATCAATTCATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAGTTTAAATCTGGAAAGAGTCCAATAATGACTGCAACAGATGTTGCAGCTCGTGGTTTAGATGTGAAGGATGTGAAGTACGTGATAAATTATGACTTCCCGGGATCACTTGAAGATTATGTACATCGTATTGGTCGGACTGGGAGAGCTGGTGCTAAAGGAACTGCATACACGTTTTTCACAGCTGCTAATGCCAGATTTGCAAAGGAACTTATAACCATACTCGAGGAAGCTGGACAAAGAGTGAGCCCTGAATTGGCTGCAATGGGACGTGGTGCACCTCCTCCCCCATCAGGTTTCCGAGACCGAGGGAAGGGTTATGGCAGTGGTCGCTCATGGAGCTAG 1503 0.4877 MSRYDSRSADPASYRDRRSDSGLGGPPASASASSRRDYDDGGAASPRKLNLDGLPHFEKNFYHESPSVRAMTDSDVDEYRLRREITVEGRDVPKPVKSFHDVGFPEYVLQEIKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSQDLKANHAIRQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQRVSPELAAMGRGAPPPPSGFRDRGKGYGSGRSWS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc135g00003 500 CDD SF2_C_DEAD 316 446 - -
Stsc135g00003 500 FunFam ATP-dependent RNA helicase RhlB 307 479 - -
Stsc135g00003 500 Gene3D - 309 474 IPR027417 -
Stsc135g00003 500 MobiDBLite consensus disorder prediction 1 17 - -
Stsc135g00003 500 Pfam DEAD/DEAH box helicase 121 292 IPR011545 GO:0003676|GO:0005524
Stsc135g00003 500 CDD DEADc_DDX5_DDX17 108 303 - -
Stsc135g00003 500 SMART ultradead3 116 319 IPR014001 -
Stsc135g00003 500 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 249 257 IPR000629 -
Stsc135g00003 500 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 128 303 IPR014001 -
Stsc135g00003 500 MobiDBLite consensus disorder prediction 1 51 - -
Stsc135g00003 500 MobiDBLite consensus disorder prediction 473 500 - -
Stsc135g00003 500 Gene3D - 60 307 IPR027417 -
Stsc135g00003 500 SMART helicmild6 356 437 IPR001650 -
Stsc135g00003 500 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 331 476 IPR001650 -
Stsc135g00003 500 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 97 125 IPR014014 GO:0003724
Stsc135g00003 500 Pfam Helicase conserved C-terminal domain 328 437 IPR001650 -
Stsc135g00003 500 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 70 475 - -
Stsc135g00003 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 453 IPR027417 -
Stsc135g00003 500 FunFam probable ATP-dependent RNA helicase DDX17 59 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc135g00003 Stsc-Chr135 8454 12112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc135g00003 84 457 Eukaryotic Initiation Factors Gene Family AT3G19760 34.667 3.80e-78 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc135g00003 K12823 - gmx:100781619 903.279