Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc134g00013 ATGGAAGACAAAGCAATGGGAGAAAATGAGACCAAGGATTCAATGGATGTTTCTCCGGAACCATCAAATTCACAAGACAATGTCGAAGACTGCGAGATGAATGGTGCGAAAGAGAACGTGAGTTGTACTTGTGATTGCGGCGGTAGTAGTAGTAAGTGTGCGTATGTGACTGCGGATGATATTACCAACCAGACGTTTGAAACATCGGATGCAGCCTATAATTTATATGTAAGCTACGCGAGGTGTATTGGCTTTGGAGTTCGTAAGGGTGATGCAGCACGCGGAAAGGATGGAACTCTTTGTAGAAGGCGGTTTTTTTGCAATAAGGAAGGAAAGAGACATGAGAAATTCATCTCTAATCCTGATAGGAAAAGGGAGCATAAAGCTTTGACTCGAACTGGTTGTGAAGCCATGCTTTCGGTGTACTTTGATACTAAGTCTTCAATTTGGAGGGTAAGAAGATTAGTTGAGGAGCACAACCATGATCTAGTCCCCCAATGTTTGGTACATCTCATTCCAAATCATCGAGGAATGACCGAGGCTCAAAAAGCACAGGCTAACGCCATGCATGATAATGGTCTCCCAACCTCTAAGATAATGGGACTAATGGTAGGACAAGCAGGTGGTTATGCTAACATCAGGTTCACAAAGAAGGACTTGGATAACCACATTGGAAGATCTCGACATGCAAAGCTCCTTGGTGGGAATGCCAATGCAACAATAAGCTATCTACTTGGGAAGGTAGATGTTGATCCCATGGCCATGGCTAAGTACAGTCCTACCAGTCAAAATCGGCTAGCAAACTTGTTTTGGGCGGACGGAATTTCTAGGGCCGACTATCAGTGCTTTGGAGATGTGCTCGCATTTGATACGACTTATAAGAAGAATAAGTACAAGAAGCCGTTGGTAATTTTCTCGGGTTCTAATCATCACTGCCAGACATGCATATTTGGCTTTGCCTTGGTAGAGGATGAAAAAACAGCAACATATACCTGGTTGTTGGAAAACTTTATGGAGGTAATGTTGAACAAGTCTCCTAATGTGGTTATCACCGATGGCGATGAGGCAATGAAAGCTGCAATTTGTAAAGTATTCCCAAATGCAACTCACCGATTATGTGGTTGGCATATTCAACAGAATGTAACGGCAAAAACTAAAAATAAATCTTTTGCCGAAGATTTCAGAAAATGTTTGTATGTTCCATGGCATCCGGACGAATTCGAAGATTTTTGGGTGACTATGCTGCAACAATATGGGCTGGAAGAAAATGTCTGGGTTCATCAGGAATATGAAAAGAGGAAATCCTGGGCATGCGCTTACTTGCGCGATAAATTCTGCGCAGGTTTTAGAACGACATCCAGGTGCGAGGGGATAAATAATTTCATCAAGAGGTTTGTGCACCAGCGCCGAAGTCTTCTAGAGTTTGTCCAAGGTCTTGAACATGCTGTAAGAGACTATAGGCACAATGAATTAGTTTCTCAATTTAAGTCTGTGTATGGGGAGCCCGTACTAACTACTGGTTTAAAATCACTAGAGCTTTGTGCTGCTAATTATTACACAAGGGAGATTCTTGCAAAAGTCAAAGAGGAGATTCTAGGTGTGGTGGGATTTGATATAGTAGATGAAGAAAATATATCTACTCTTATTGTGTTAATGGTAAAGGAGTGTGAGGGGAGGCAACGAGAATATAGAGTAGTATATGATCTCAACACTATGAACATGGAGTGTGTATGTAGTAGGTGGAGTAGTGAAGGATATCCTTGTTCGCACATGTTCTATGCTATGAAAAGATTGGGTTTACAGAAGTTGCCAGAGAGTCTTCTTTTAAAAAGATGGTCCAAGGATGCCAAAAAATATTCTGATAAAACCCTTGTTGGAAGCACTGTGCATGATATGGAAAGAGCTTTTTTAATGCGCTACGTAGCACTGTCAGTGGCAACAGCGTGGATGGTCTTCCTAGGAGCCCAAAATGGTCCTTCGTTCCATGATACCATTAATGAAGTCTACCGTTTGACCAATGCACTAGAGCAAAAGTCCGGCCTAAAAAAGCAAGCAACCAAATCTCCCGCGCAGAACTTAGTTGATGACCCTTTAGTGGTCAAGACAAAAGGAGCACCCAAGGGAAGAAAAGAGAGAGGAAAAAGGAAGTGCACGGAGTGTAATAATGCTGGTCATTCAAAGAGGAATTGTCGTGCAAGAAATGACAAAAACATACCGAGCGAAGGGGATGGCAGTGGCTTGTAG 2244 0.4238 MEDKAMGENETKDSMDVSPEPSNSQDNVEDCEMNGAKENVSCTCDCGGSSSKCAYVTADDITNQTFETSDAAYNLYVSYARCIGFGVRKGDAARGKDGTLCRRRFFCNKEGKRHEKFISNPDRKREHKALTRTGCEAMLSVYFDTKSSIWRVRRLVEEHNHDLVPQCLVHLIPNHRGMTEAQKAQANAMHDNGLPTSKIMGLMVGQAGGYANIRFTKKDLDNHIGRSRHAKLLGGNANATISYLLGKVDVDPMAMAKYSPTSQNRLANLFWADGISRADYQCFGDVLAFDTTYKKNKYKKPLVIFSGSNHHCQTCIFGFALVEDEKTATYTWLLENFMEVMLNKSPNVVITDGDEAMKAAICKVFPNATHRLCGWHIQQNVTAKTKNKSFAEDFRKCLYVPWHPDEFEDFWVTMLQQYGLEENVWVHQEYEKRKSWACAYLRDKFCAGFRTTSRCEGINNFIKRFVHQRRSLLEFVQGLEHAVRDYRHNELVSQFKSVYGEPVLTTGLKSLELCAANYYTREILAKVKEEILGVVGFDIVDEENISTLIVLMVKECEGRQREYRVVYDLNTMNMECVCSRWSSEGYPCSHMFYAMKRLGLQKLPESLLLKRWSKDAKKYSDKTLVGSTVHDMERAFLMRYVALSVATAWMVFLGAQNGPSFHDTINEVYRLTNALEQKSGLKKQATKSPAQNLVDDPLVVKTKGAPKGRKERGKRKCTECNNAGHSKRNCRARNDKNIPSEGDGSGL 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc134g00013 747 MobiDBLite consensus disorder prediction 1 15 - -
Stsc134g00013 747 ProSiteProfiles Zinc finger SWIM-type profile. 563 599 IPR007527 GO:0008270
Stsc134g00013 747 Pfam MULE transposase domain 286 380 IPR018289 -
Stsc134g00013 747 MobiDBLite consensus disorder prediction 680 747 - -
Stsc134g00013 747 MobiDBLite consensus disorder prediction 16 30 - -
Stsc134g00013 747 MobiDBLite consensus disorder prediction 702 738 - -
Stsc134g00013 747 Pfam FAR1 DNA-binding domain 75 165 IPR004330 -
Stsc134g00013 747 ProSiteProfiles Zinc finger CCHC-type profile. 715 731 IPR001878 GO:0003676|GO:0008270
Stsc134g00013 747 SMART 26again6 574 601 IPR006564 GO:0008270
Stsc134g00013 747 MobiDBLite consensus disorder prediction 1 30 - -
Stsc134g00013 747 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 60 634 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc134g00013 Stsc-Chr134 74570 80475 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Stsc134g00013 MULE 8.2e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc134g00013 - - ahf:112717474 1165.98