Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1349g00001 ATGTGCAGCGGTTCCAAGAGGAAACCTACTCAAACTAGTTTGGTTATGGAGGATGATTATGGAAGACAAGAAGGTCAGCATCAAAAGATTTCTGCTTTGCTTGAACTTGCAGCTGCAGATGACCTAATTGGTTTCAAAGACTCAGTTGAGAAAGAGGGTTGTGATGTCGATGAGGCTGGGTTGTGGTTTGGAAGGAGGCTTGGCTCAAAGAAAGTGGGTTATGAAGAGAGAACACCGCTTATGGTTGCTGCTATGTTTGGAAGCCTGAGAGTTTTGGCTTATATTCTCGGAACTGGCTGTGTTGATGTCAACAGGGCTAGTGGCTCAGATGGTGCTACTGCCATTCATTGTGCTGTTGCTGGGGGTTCTGCTGCTTCCCTTGAGGTTGTCAAGCTTTTGCTTGAATCATCGGCGGATGTTAATGCTGTTGATTCAAATGGTAGCCGGCCTGCTGATTTGGTTGTCTCTGGGGCTAACTCTATCCCCATGTCAAGAAAGAGGATGCTGCAAGTCATGCTGGAAGGTACAGTTGGTGCTGACAAGACATTTGAGGATGTAGTTGGCCAAATCGAGGAAGAACAAAGAGAAAATGCTGTGAACATGCCTCATGTTTTGAAAGATGGGGCCGAGAAGAAGGATTATCCGGTTGATCACTCTCTTCCTGACATAAAGAACGGGATATATGGTACTGACGAGTTCAGGATGTATACATTCAAAGTGAAGCCTTGCTCGAGGGCATATTCTCATGATTGGACCGAGTGTCCCTTTGTTCATCCAGGGGAAAACGCCAGACGACGTGATCCAAGGAAATACCATTATAGCTGTGTCCCTTGTCCTGAATTCCGGAAGGGATCATGCAGCAAGGGAGATTTATGCGAGTATGCACACGGTATTTTTGAGTGCTGGCTTCATCCTGCCCAGTACCGGACCCGGCTTTGCAAGGACGAGGGTGCGTGTGCGAGAAGAGTTTGCTTCTTTGCTCACAAGCCTGAGGAGCTTCGCCCCCTCTATGCTTCTACTGGTTCGGCTATGCCATCTCCCAGATCTTATTCGGGTGGTTCTCCATTGGATATGGGTCCAGTTAGCCCAATCACACTTGGTTCTCCGTCTGTAATGATACCACCTGTGTCAACGCCGCCTTTGACTCCTTCCGGATCCTCCTCTCCTCTCTCCGGATCTATGTGGCAGAATCAATCTAACATCCCAACCCTGCAGCTTTCTAGAAGCAGATTGCAAACTGCATTAACGGCTAGAGATAATTCGGATACTGAATTGCTTATGCAGCTAATGATTGATGAGATGAATGGTCTTTCCTCCCCCAGTTGGAAAAATTCATTGACTAATAATAATCCATCATATCATTATTCTTTGGGTGATCGCGCTGCAGATCTAAATAGGCTTTCAGGAGTGAAGCCTACTAATCTTGACGACACTTTTGGGTCTGTTGACCCGTCAATTTTGTCAAAATTCAATGGAATCTCATTTGATGCTGCAGGACCTCAGTTACATTCTCCAACTGGATTGCAGATGCGCCAGAACATAAATCAGCAGCTGCGAGGCTATTCTTCTGGCTTGTCCTCTCCGAAAATGATTGGATCCCCAAAATCCAGGGTTGATCCGACAGGGGAAGCAGCTGCAATGGCTTTCAATCCAAGACTTGCTGCCTTTTCACAGCGGAGCCAGAGCTTTGTTGAGCGCAGCATGGCAAACCGTCATTCTGAGGTTCCTTCGCTGGCCACCTCTGTAGCAGTGAAGCCTTCTATGGCATATTCTCATTGGGGCTCTCATGATGGAAAATTGGATTGGCCGATGCATGGCGAGGAGCTGAATAAGCTGAGGAAATCTGCTTCTTTTGGATTTCGAAGCGGGGGAATTCCTTCGCCGAGGGCTGCAACCAGAATGTCAGCTGCAAAAGTTGACGAACCAGACGTGTCTTGGGTTAACTCGCTTGTGAAGGACGCTACAGCACAGCCAGAGTCCGGCCCAGTTAGTGCCGAAGATCAGCAGCAGCTGCAATGCCATCTCAACAATGGAACAGATGTGATTCCAGCATGGTTGGAGCAAATGTACATTGACCAGGAGCAAATGGTGGCATGA 2097 0.4773 MCSGSKRKPTQTSLVMEDDYGRQEGQHQKISALLELAAADDLIGFKDSVEKEGCDVDEAGLWFGRRLGSKKVGYEERTPLMVAAMFGSLRVLAYILGTGCVDVNRASGSDGATAIHCAVAGGSAASLEVVKLLLESSADVNAVDSNGSRPADLVVSGANSIPMSRKRMLQVMLEGTVGADKTFEDVVGQIEEEQRENAVNMPHVLKDGAEKKDYPVDHSLPDIKNGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDLCEYAHGIFECWLHPAQYRTRLCKDEGACARRVCFFAHKPEELRPLYASTGSAMPSPRSYSGGSPLDMGPVSPITLGSPSVMIPPVSTPPLTPSGSSSPLSGSMWQNQSNIPTLQLSRSRLQTALTARDNSDTELLMQLMIDEMNGLSSPSWKNSLTNNNPSYHYSLGDRAADLNRLSGVKPTNLDDTFGSVDPSILSKFNGISFDAAGPQLHSPTGLQMRQNINQQLRGYSSGLSSPKMIGSPKSRVDPTGEAAAMAFNPRLAAFSQRSQSFVERSMANRHSEVPSLATSVAVKPSMAYSHWGSHDGKLDWPMHGEELNKLRKSASFGFRSGGIPSPRAATRMSAAKVDEPDVSWVNSLVKDATAQPESGPVSAEDQQQLQCHLNNGTDVIPAWLEQMYIDQEQMVA 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1349g00001 698 SMART ANK_2a 75 105 IPR002110 GO:0005515
Stsc1349g00001 698 SMART ANK_2a 110 142 IPR002110 GO:0005515
Stsc1349g00001 698 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 297 IPR000571 GO:0046872
Stsc1349g00001 698 Gene3D - 273 335 - -
Stsc1349g00001 698 Pfam Ankyrin repeats (3 copies) 57 144 IPR002110 GO:0005515
Stsc1349g00001 698 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Stsc1349g00001 698 SMART c3hfinal6 307 330 IPR000571 GO:0046872
Stsc1349g00001 698 FunFam Zinc finger CCCH domain-containing protein 66 230 298 - -
Stsc1349g00001 698 Gene3D - 5 192 IPR036770 -
Stsc1349g00001 698 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872
Stsc1349g00001 698 ProSiteProfiles Ankyrin repeat region circular profile. 110 144 - -
Stsc1349g00001 698 PANTHER UNKEMPT FAMILY MEMBER 35 653 IPR045234 -
Stsc1349g00001 698 ProSiteProfiles Ankyrin repeat profile. 110 145 IPR002110 GO:0005515
Stsc1349g00001 698 SUPERFAMILY Ankyrin repeat 36 159 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1349g00001 Stsc-Chr1349 5875 9185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1349g00001 24 693 C2H2 Transcription Factor Family AT5G12850 38.022 5.12e-140 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Stsc1349g00001 Ank_2 2.9e-08 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1349g00001 - - aprc:113846970 956.436