Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1343g00005 ATGCACCTTAAGCTCGGCGAAACATCGGTCATGGTGGTTTCTTCTCCGGAAGTTGCCAAAGAAGTGTTTAAAACACATGACATCAACTTCGCCGAAAGACCTAAGCATTTAGGTGCAGATATCTTGACCTATGGCTCCACGAACATAGCCACCGCGCGATACGGCGGCTATTGGAAGCAACTAAGAAGAATAGCCACAATGGAACTTCTTAGCCCTAAGCGCGTGTCTTCATTCAAATCAATAAGGGAAGAAGAGGTAACGAATTTGATAACATGGATTTCTGCTAACAATGGATCTTGTGTTAATCTTAGTGAGAAAGTTGCTTCCTTGACAAGCGTAATCACCGCTAGGGCAATTTTTGGAAAAAAGTGCAAGGACCAAGAAGAGTTCATTTCGTTGTTGAAGAAGCTTGGAAATATTGTCGAACGGATATTTGTCGTATTTAGTCTTTTTCCATCTCACATGTGGCTTCATTTTATCAGTGGAGCCAAGCGTGAGGCAGAAAAAGTGCATAAAGAATTTGATATCGTTATTGAAAATATCATAAAAGAAAAAATAAAAAGAATGAAAAACGGTGGTGATGAATCTGAAACGGAAGATCTTCTTTCTATTCTCCTAAATATTGTTGAAGATCATGGAGCCTATGAGTACCCTGTGACAATCAACAGTGCCAAAGCTATTGTTTTTGACCTATTTGGTGCCGGAATTGAAACATCATCTGGAGTGATAGAATGGGCGATTTCAGAGCTAGTGAAGAATCCAAGAACAATGGCAAGAGCTCAAGAAGAAGTTAGAACAGTATTTGGAGTCAATGGATACACCAATGAATCATCATCCTCTCTTGAGAAACTCACATATTTAAAAGCAGTTATCAAAGAAACAATGAGATTACACCCTCCATTTCCATTACTTCTTCCAAGAGAATGCAGAGAGACATGTGAGATCAACGGATACACCATAGCCGGAGGAACACAAGTGATAGTGAATGCATGGGCAATTGGAAGAGATCCTAAGCATTGGGGAGGCGAAGAAGACGCCGAGATTTTCCGTCCGGAAAGGTTTCTAGAAAGTTCGATTGATTACAAAGGTTCCGATGCTGAGTTCATACCGTTTGGTGCAGGGAGAAGAATATGTCCGGGGATTTATTTTGCTGTTGCCAGCATTGAGAGTTGTGTTGCGCAACTTTTGTATTATTTTGATTGGAAAGTTCCAGAAAATGGAGGAGAGATTGATATGGCTGAATATTTTGGAAGCACTGCAAGAAGGAAGAATGATCTAATTTTAGTTCCAATTCCATGGAATAAATAA 1308 0.4006 MHLKLGETSVMVVSSPEVAKEVFKTHDINFAERPKHLGADILTYGSTNIATARYGGYWKQLRRIATMELLSPKRVSSFKSIREEEVTNLITWISANNGSCVNLSEKVASLTSVITARAIFGKKCKDQEEFISLLKKLGNIVERIFVVFSLFPSHMWLHFISGAKREAEKVHKEFDIVIENIIKEKIKRMKNGGDESETEDLLSILLNIVEDHGAYEYPVTINSAKAIVFDLFGAGIETSSGVIEWAISELVKNPRTMARAQEEVRTVFGVNGYTNESSSSLEKLTYLKAVIKETMRLHPPFPLLLPRECRETCEINGYTIAGGTQVIVNAWAIGRDPKHWGGEEDAEIFRPERFLESSIDYKGSDAEFIPFGAGRRICPGIYFAVASIESCVAQLLYYFDWKVPENGGEIDMAEYFGSTARRKNDLILVPIPWNK 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1343g00005 435 PANTHER OS08G0105600 PROTEIN 1 433 - -
Stsc1343g00005 435 SUPERFAMILY Cytochrome P450 2 432 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1343g00005 435 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 371 380 IPR017972 GO:0005506|GO:0016705
Stsc1343g00005 435 CDD CYP71-like 1 426 - -
Stsc1343g00005 435 Pfam Cytochrome P450 2 414 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1343g00005 435 FunFam Cytochrome P450 99A2 1 431 - -
Stsc1343g00005 435 Gene3D Cytochrome P450 1 429 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1343g00005 435 PRINTS P450 superfamily signature 234 251 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1343g00005 435 PRINTS P450 superfamily signature 289 300 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1343g00005 435 PRINTS P450 superfamily signature 369 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1343g00005 435 PRINTS E-class P450 group I signature 368 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1343g00005 435 PRINTS E-class P450 group I signature 378 401 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1343g00005 435 PRINTS E-class P450 group I signature 243 269 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1343g00005 435 PRINTS E-class P450 group I signature 288 306 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1343g00005 435 PRINTS E-class P450 group I signature 223 240 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc1343g00005 435 PRINTS E-class P450 group I signature 18 39 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1343g00005 Stsc-Chr1343 14150 16241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1343g00005 1 433 Cytochrome P450 AT3G48280 38.161 3.34e-104 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1343g00005 - K23807 gmx:100779851 536.569