Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc133g00019 ATGGTGGCCATTGGCATTGTGGCCAGAGTGCTGGTGCTGCTGCTGGTGGCGCTGTTTCCACTGGGAAAGGCAGATCTGGCATCGGAGCGGGCGGCATTGCTGGCTCTACGGTCCTCTGTCGGTGGCAGGACCCTCTTCTGGAACGCCACGAGCCAGAGCCCCTGCAACTGGGCTGGCGTGGAATGCGAACAGGGTCAGGTGGTAGAGCTGCACCTGCCCGCCGTGGCACTCTCCGGGCGCATTCCAGCGGGAATATTCGGAAACCTGACACATCTGCACACCCTGAGCCTGCGGTTCAACGCGCTCACGGGTCCCCTCCCTGCAGATCTGGCATCGTGCATTAACCTCCGGAACCTGTACCTGCAGCGCAATCTGCTGACGGGAGAAATCCCGGAGTTTCTGTTCCGGCTGCCGGACCTGGTCCGCCTGAACTTGGGCTTCAACAACTTCTCGGGTGGGGTCCCACCGGAGTTGAACAAGTTGAGTAGACTTAGAACTCTTTACCTCCAAAACAATCAGCTCTCCGGTCCCATCCCGCAGCTCAGCCTGCCGGACCTCGAACAGTTCAACGTCTCCAACAACCTCCTCAACGGCTCTGTCCCCAACAAGCTCCAGAAATTCCCCCAAGATTCCTTTCTTGGCAACTCCCTCTGCGGCCGCCCCCTCAAGCTCTGCCCCGGCGACGATGCATCTGCATCTTCTCCTTCCGGCGACATTCCCAATGACAAGATCAAGAAGAAAAACAAGTTGTCTGGCGGTGCCATTGCTGGAATCGTCATCGGATCCGTGGTGTGTCTTCTGCTGCTCGTATTCGCACTGATCCTTTTGTGTAGGAACAAGAGCACCAAAAAGACCAGTGCCGTTGAAGTCGCAACCGTCAAGAACCCAGAGCCCGAACTTCCAGGCGACAAGCCAGTGGAAGACGTGGAGAACGGGCCGGGGCCCCACAGCAATGGCGCTCCCGATAATGGGTACACGGTGGCTGCAGCAGCTGCCGCGGCTATGGCGGCAGGGAACGGGAGCAAGGGCGAGGCCAACGGCGGTGGTGGCAGTGGAGCCAAGAAGTTGGTGTTTTTTGGGAATGCGGCAAGAGTGGGGGCGGCGAGGCCATTTGATCTGGAGGATTTACTTCGGGCTTCGGCGGAGGTATTGGGGAAAGGGACGTTTGGTACCGCATACAAGGCGGTTTTGGAGGCAGGACCGGTGGTGGCTGTGAAGAGGTTGAAGGATGTGAGTATTTCCGAGAAGGAGTTCAAGGAGAAGATCGAGTCCGTGGGAGCAATGGATCACGAGAACTTGGTTCCTCTGAGGGCTTACTATTTCAGCAGAGATGAGAAGCTCCTTGTCTATGACTACATGCCCATCGGAAGCTTATCTGCTCTTTTGCATGGAAACAAAGGAGCGGGGAGGACACCGTTAAACTGGGAAATAAGATCAGGCATTGCACTTGGCGCTGCTCGAGGGATTGAGTACCTTCACTCACAGGGAACTAATGTTTCTCATGGAAACATTAAGTCCTCTAATATCCTCTTAACCAAGTCCTACGATGCTAGAGTATCTGACTTCGGCCTAGCCCACCTTGTTGGCCCCTCCTCCACCCCTAACCGAGTGGCCGGCTACCGCGCCCCCGAGGTAACCGATCCTCGCAAAGTATCCCAGAAGGCAGATGTGTACAGCTTTGGCGTGTTGCTCTTGGAGCTACTGACCGGCAAGGCACCCACCCATGCTCTCCTGAACGAGGAAGGAGTAGACCTCCCTAGATGGGTCCAATCCGTTGTCAGAGAAGAGTGGACTTCGGAGGTGTTTGATCTTGAGCTGCTGAGGTACCAGAATGTTGAAGAGGAGATGGTTCAGTTGTTGCAGCTTGCAGTTGATTGCGCAGCACCCTACCCTGATAAGCGCCCTTCCATGTCCCAAGTGGCACAAAGCATCGAAGAATTGCGCCGCTCCAGCTTGAAAGAGGAACAGGACCAAATCCGAACCCAACAACATGATCTTGTAGAGTTATAG 2010 0.5592 MVAIGIVARVLVLLLVALFPLGKADLASERAALLALRSSVGGRTLFWNATSQSPCNWAGVECEQGQVVELHLPAVALSGRIPAGIFGNLTHLHTLSLRFNALTGPLPADLASCINLRNLYLQRNLLTGEIPEFLFRLPDLVRLNLGFNNFSGGVPPELNKLSRLRTLYLQNNQLSGPIPQLSLPDLEQFNVSNNLLNGSVPNKLQKFPQDSFLGNSLCGRPLKLCPGDDASASSPSGDIPNDKIKKKNKLSGGAIAGIVIGSVVCLLLLVFALILLCRNKSTKKTSAVEVATVKNPEPELPGDKPVEDVENGPGPHSNGAPDNGYTVAAAAAAAMAAGNGSKGEANGGGGSGAKKLVFFGNAARVGAARPFDLEDLLRASAEVLGKGTFGTAYKAVLEAGPVVAVKRLKDVSISEKEFKEKIESVGAMDHENLVPLRAYYFSRDEKLLVYDYMPIGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGTNVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAPYPDKRPSMSQVAQSIEELRRSSLKEEQDQIRTQQHDLVEL 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc133g00019 669 ProSitePatterns Protein kinases ATP-binding region signature. 384 406 IPR017441 GO:0005524
Stsc133g00019 669 FunFam pollen receptor-like kinase 1 342 452 - -
Stsc133g00019 669 Pfam Leucine rich repeat N-terminal domain 27 62 IPR013210 -
Stsc133g00019 669 SUPERFAMILY Protein kinase-like (PK-like) 382 647 IPR011009 -
Stsc133g00019 669 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515
Stsc133g00019 669 SUPERFAMILY L domain-like 45 207 - -
Stsc133g00019 669 Gene3D Ribonuclease Inhibitor 185 225 IPR032675 -
Stsc133g00019 669 MobiDBLite consensus disorder prediction 294 320 - -
Stsc133g00019 669 Gene3D Ribonuclease Inhibitor 26 181 IPR032675 -
Stsc133g00019 669 CDD STKc_IRAK 384 647 - -
Stsc133g00019 669 FunFam Probable inactive receptor kinase At1g48480 453 656 - -
Stsc133g00019 669 FunFam Probable inactive receptor kinase RLK902 26 181 - -
Stsc133g00019 669 Coils Coil 652 669 - -
Stsc133g00019 669 Gene3D Transferase(Phosphotransferase) domain 1 453 668 - -
Stsc133g00019 669 PANTHER OS05G0588300 PROTEIN 9 653 - -
Stsc133g00019 669 Pfam Protein kinase domain 381 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc133g00019 669 Gene3D Phosphorylase Kinase; domain 1 366 452 - -
Stsc133g00019 669 ProSiteProfiles Protein kinase domain profile. 378 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc133g00019 Stsc-Chr133 73316 76355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc133g00019 25 648 Receptor kinase-like Gene Family AT1G48480 64.984 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Stsc133g00019 Pkinase 5.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc133g00019 - - gmx:100818955 937.947