Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1337g00004 ATGGAACTTTATATACAGGTTCTTGTGGTTCTACCTCACCTACAGTTTATAAGAACGCCGCAACACTCTTCACTGATATTTCCTGCACTTTTCTCTTATTTTCACTCTTTGACAAGCTTTTGCGTAAACATGCCATTATGGTGGGGAAGGTCTAAAGAGGGAAAGAAGAGAAAGTCGAAGAGGGAAAGTATTATTGAGGCAATACAGCAGAAATTTAAGAATGCTTCTGAAAAGATGCGCAATGACAAATCCGAAGAATCTAGAAGACATTGTATTGGCACCAGTTCAGAAAAGAGATCCCAATCTGCTGTGCCTTCTAGATCATCATCACCCTCGTCCAAATATATCTCCCGCTGTCAAAGTTTTTCAGAAAGGCCACTTTCTAAGCGGCTCCCACTGCCGGGGTCGCATCTTCCTACTGTCAGTGATGCAAATTCTGAAATTTGTTTACCATCAATAATGGAAAGGGCTAGTGGCTCAAAGCAATCTCCATATTTTCCCCTACCCGCACCTGGTGATGTTTCCAACAGGGGATATCCTACTGATGCTGAGAGATATATAGATACTGCATCTGTTTCAAGTGACAGCTCTGGTTTTAGTGGTGACTCATCTGATTCACATCTCATTAGTCCTCTGGCAACTGACTTTGAAATTGGAAACACGACCACCATTAACAAATCTTTCAGGAACCAATCACCTGTTACTTTCCAGAGTGACTTAGGAGCATCCTCAAACCGAGCACCTCAATTGTGCAGCGTTAAGAATCCTTCTATTTCACCAAAACAGAGTTGTTTGCATTTGCAAAATCTAAAAGTTAGTACCTGTGGTTTATTCGGTGCTCCAGAAAGTTCAACATCAAGTGCTTCAAAAAGTCCGGTGAGAGAACTTAGCCCTGACCAGGTATTAAACTCTGAACTATGGACAGGAAAGCCTTGTCCATATGTATCTTCAGGGAACTACTCTAGTCCCGGTTCAGGCCAAAACTCAGATGTTGGGGATCTGCCGGGACAGGTATTTTTGCCTATTAATAGGTACAGCCCTGAGTGTTCTCCTATACCTAGTCCGAGAATGACAAGCCCTGGTCCTCGTTCCAGAATACACAGTGGAGCTGTCACACCTTTGCATTCACAAGCTGGGGCCTGCACTTCAGAATTAACTACAAGACGTCCTGATGATGTTACTCAACAAACTCATCCTTTACCGCTTCCTCCAATAGCAGCAACCAGTTCTTGCCTTTCTCCAAACTATTCTTCATCAACAACTCCTTCAGCTCCTCTCAGTCCTTCCAGAGCAGAGATCCAAACAAATCAAGTTTCACGCTGGAAAAAGGGGAAGTTGCTTGGAAGGGGAACATTTGGACATGTTTATCTTGGTTTTGACAGTGAAAGTGGTGAGATGTGTGCGATGAAGGAGGTAACACTTTTTGCAGATGATGCTAGATCGAGGGAATGCACACAGCAACTTCAACAAGAAATTGTGCTTCTAAGTCAGTTGCAGCATCCAAATATAGTCCGGTATTATGGTTCTGAAACGGTAGAAGACAAACTTTATATATACTTGGAGTATGTCGCAGGTGGGTCTATTTATAAACTGCTTCGAGAGTATGGCCAGTTAGGTGAAAATGCCATTCGTAACTATACTCGGCAAATTCTGTTAGGACTTGCATATTTGCATGCGAAGAACACTGTCCATCGTGACATCAAGGGAGCAAATATACTAGTTGACCCTAATGGATGGATTAAATTGGCAGATTTTGGGATGGCAAAGCATATAACTGGGGAGTCTTGTCCATTTTCATTCAAAGGAAGTCCTCACTGGATGGCACCTGAGGTTGTAAATAATTCAAATGAATGTAATCTTGCTGTTGACATATGGAGTCTTGGCTGCACTGTTCTGGAGATGGCTACAACAAAACCACCTTGGAGCCAGCTTGAAGGGGTTGCTGCTATATTTAAGATTATACTGTTGGAGAAACTGCCTGAAGCACCAGATCATCTATCAGAAGAGGGAAAAGACTTTGTGAGGCTTTGTCTACAAAGGAATCCACAAGACCGCCCTTCGGCTGCTCAACTTCTAGAGCATCCATTTGTCAAAAAGGCTACACCAGAAAGAACCATTCTGACTGCACATCCTTCAGAATCACCAGCAGCTGTTGTACATACACTGAGATCTATGGCCATTGAACCTGCAAAAGATAATTTATGTTTAGAGTCAGAAGTGGCTGGTGGTATCAGTTGGCCTAGAAGATTGAGAATCGGTTCAGCATCCAGTGATATGCATACACCAAGGAACATTTCATGCCCTGTTTCCCCTGTTGGACAGGGGCTTTTGCATTATGGAACATTGGATGTGGCTGGAAGGGTGCATACTGTTCCATTTGTTAGTCCTCATACTTCATCTGGCCCAACCACACCAGTCAATGACAGTGGTCGTACAATCACATTTCATAGAAACAAGCAACTGATGCTCTCACATGAAGCTGAGGGTTTGATTCCGAGTTCTCAGGATGGGTTCTGTTATCATGATCCTAGACATGATGCTGTTCGAGTAACCACACTTTCTTCTCGGGATGTAATTTCATCTGATAATGATTCTCGCGCAACAAATTATAAGGGGGCTGTCCGAAGAGAATTTTATAATGTGCCACAAACGCCCATGAGGGAATGTGTTCGGATGAATACTTACCTAGATCGTCGAGCCTGTACTCCTCCAAGGCCTGGCAACTCAAATGGCATGTGA 2739 0.433 MELYIQVLVVLPHLQFIRTPQHSSLIFPALFSYFHSLTSFCVNMPLWWGRSKEGKKRKSKRESIIEAIQQKFKNASEKMRNDKSEESRRHCIGTSSEKRSQSAVPSRSSSPSSKYISRCQSFSERPLSKRLPLPGSHLPTVSDANSEICLPSIMERASGSKQSPYFPLPAPGDVSNRGYPTDAERYIDTASVSSDSSGFSGDSSDSHLISPLATDFEIGNTTTINKSFRNQSPVTFQSDLGASSNRAPQLCSVKNPSISPKQSCLHLQNLKVSTCGLFGAPESSTSSASKSPVRELSPDQVLNSELWTGKPCPYVSSGNYSSPGSGQNSDVGDLPGQVFLPINRYSPECSPIPSPRMTSPGPRSRIHSGAVTPLHSQAGACTSELTTRRPDDVTQQTHPLPLPPIAATSSCLSPNYSSSTTPSAPLSPSRAEIQTNQVSRWKKGKLLGRGTFGHVYLGFDSESGEMCAMKEVTLFADDARSRECTQQLQQEIVLLSQLQHPNIVRYYGSETVEDKLYIYLEYVAGGSIYKLLREYGQLGENAIRNYTRQILLGLAYLHAKNTVHRDIKGANILVDPNGWIKLADFGMAKHITGESCPFSFKGSPHWMAPEVVNNSNECNLAVDIWSLGCTVLEMATTKPPWSQLEGVAAIFKIILLEKLPEAPDHLSEEGKDFVRLCLQRNPQDRPSAAQLLEHPFVKKATPERTILTAHPSESPAAVVHTLRSMAIEPAKDNLCLESEVAGGISWPRRLRIGSASSDMHTPRNISCPVSPVGQGLLHYGTLDVAGRVHTVPFVSPHTSSGPTTPVNDSGRTITFHRNKQLMLSHEAEGLIPSSQDGFCYHDPRHDAVRVTTLSSRDVISSDNDSRATNYKGAVRREFYNVPQTPMRECVRMNTYLDRRACTPPRPGNSNGM 912
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1337g00004 912 ProSitePatterns Protein kinases ATP-binding region signature. 447 470 IPR017441 GO:0005524
Stsc1337g00004 912 MobiDBLite consensus disorder prediction 96 116 - -
Stsc1337g00004 912 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 93 712 - -
Stsc1337g00004 912 ProSiteProfiles Protein kinase domain profile. 441 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1337g00004 912 FunFam Mitogen-activated protein kinase kinase kinase 439 721 - -
Stsc1337g00004 912 MobiDBLite consensus disorder prediction 75 95 - -
Stsc1337g00004 912 Gene3D Transferase(Phosphotransferase) domain 1 438 726 - -
Stsc1337g00004 912 SUPERFAMILY Protein kinase-like (PK-like) 438 740 IPR011009 -
Stsc1337g00004 912 CDD STKc_MEKK1_plant 440 697 - -
Stsc1337g00004 912 SMART serkin_6 441 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1337g00004 912 Coils Coil 65 85 - -
Stsc1337g00004 912 MobiDBLite consensus disorder prediction 75 116 - -
Stsc1337g00004 912 Pfam Protein kinase domain 442 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1337g00004 Stsc-Chr1337 6911 11254 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1337g00004 44 824 MAP Kinase Kinase Kinase AT1G63700 53.523 0.0 723
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc1337g00004 Pkinase 2.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1337g00004 K20717 - gmx:100814422 926.006