Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1336g00002 ATGGAGTGGATTCGAGGACCAATCCTCGGAAGTGGAAGCTTCGCCACCGTCAGTTTAGCCACACCCAAGAACCCTTCTTCATCCATTCTTCCATTCCACTCTCCCGTTGCTGTTAAGTCCTGTGATGCTTTCACCACCTTCCTCCTCCTCAACGAGGAACACATCCTCAACCGCCTCGGTTCTTCTTGTCCTCGAATCATCAGGTGCTTCGGCCACGACTCCACCGTGGAAAACGGCGACTCTCTTTACAACATCTTCCTCGAATACGCTTCCAATGGAACGCTCGCTGATCACATGAAGAGGACTACTCGAGAAAAGAGGTTCTCCGAGAATCAAGTTAGAACCTACACGAGGTCCCTCATCGAAGGGTTGAAGCACATTCATGACAACGGCTTCGTTCACTGCGATATCAAGCTTCAGAACGTGCTTGTATTCCAAGACGGAGAGGTTAAGATCTCGGATTTCGGGCTCGCCAAGGAGAAAGGCGTGACGGTGCAGCGTGGGGACAACAAGTGGGAGTGCAGGGGAACGCCGCTCTTCATGTCCCCTGAATCCGTGAATGATAACCAGTACGAGTCTCCGGCGGATATTTGGGCCCTTGGATGCGCCGTCGTCGAGATGTTCACCGGAAAGCCAGCGTGGAACGTTAAGAGTGGGGCCAACATGTGGTCGCTGCTCATTCGGATTGGAGTCAGTGAAGAAATTCCGATCATTCCGGACGATTTGTCTGAACAGGGGAAGGATTTTTTGAGAAAGTGTTTCGTTAAAGATCCCAGGGAGAGGTGGACGGCGGAGATGCTTCTCAACCACCCGTTTATCGCCGGAGAAGATGAACGTGTTTTGGTTCATGACGAAAAAGTTGTGTCTCTGACTCTTTCAAAATCGCCCAGAAGTAACTTGGACTTCCCTGATTGGGATTATTCCACTTCCACGGTCACTGATTCAACTTCCACCACTGTTTCGTTGCCAGAGGAAAGGTTACGGCGGCTGGTGGCGGAGCAGGGGCCACCGGATTGGTCAGAATCGGAGGGCTGGACAAGTGTTAGGTGA 1050 0.5181 MEWIRGPILGSGSFATVSLATPKNPSSSILPFHSPVAVKSCDAFTTFLLLNEEHILNRLGSSCPRIIRCFGHDSTVENGDSLYNIFLEYASNGTLADHMKRTTREKRFSENQVRTYTRSLIEGLKHIHDNGFVHCDIKLQNVLVFQDGEVKISDFGLAKEKGVTVQRGDNKWECRGTPLFMSPESVNDNQYESPADIWALGCAVVEMFTGKPAWNVKSGANMWSLLIRIGVSEEIPIIPDDLSEQGKDFLRKCFVKDPRERWTAEMLLNHPFIAGEDERVLVHDEKVVSLTLSKSPRSNLDFPDWDYSTSTVTDSTSTTVSLPEERLRRLVAEQGPPDWSESEGWTSVR 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1336g00002 349 SUPERFAMILY Protein kinase-like (PK-like) 3 321 IPR011009 -
Stsc1336g00002 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Stsc1336g00002 349 Pfam Protein kinase domain 8 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1336g00002 349 Gene3D Transferase(Phosphotransferase) domain 1 3 329 - -
Stsc1336g00002 349 ProSiteProfiles Protein kinase domain profile. 3 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1336g00002 349 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 312 - -
Stsc1336g00002 349 CDD STKc_MAPKKK 2 273 - -
Stsc1336g00002 349 SMART serkin_6 3 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1336g00002 349 ProSitePatterns Protein kinases ATP-binding region signature. 9 39 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1336g00002 Stsc-Chr1336 6687 7736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1336g00002 1 349 MAP Kinase Kinase Kinase AT5G67080 52.260 3.06e-126 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc1336g00002 Pkinase 2.2e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1336g00002 - - aip:107641670 538.88