LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc1335g00003	ATGACTGCAAGAATTTTTGAATCTGAGGCAACATACAAATTTCCTATCCAACCTGACAAGCGCTATTGGCTGAGGCTGCATTTCTATCCTTCTAACTATGGAAGCCATGACTCTGCTTATTCATATTTCTCTGTCACAGGAAATTCCATCACACTCCTCAGCAATTTCAGCGCCTCAATCACTTGCCTTGCTCTCTCACAGGCTTACATTGATAGGGAGTATTCCCTTGCAGCTCTGGGTTCTGACACCTTGACTCTCACCTTCAAGCCTGCTGAAAAGATTGGTGCTTTTGCTTTTATCAATGGCATTCAACTGATCCAAATGCCAGATCTTTTTGGTTCTGCTTCTATGGTTGGTTTCGACCAAACATTAGATGCTAAGAGCATGAATTTGCAAACAATGTTCAGATTAAACGTTGGTGGAAAATACATCTCTCCTACACAAGATTCTGGCCTTACAAGGATGTGGTATGATGACTATCCTTACCTCTATGGTGCATCCACTGGAATCACCACAAGTGCTCCAAGTGATGTGAAACTCAACTACCAAAGCATGCCACAGTACACTGCTCCTTCTGATGTCTACCTCACATCAAGATCAATGGGTTCTGACAAGAATCTCAATATGGGCTATAACCTCACATGGATTTTCCAAATTGATCCCAATTCCATGTACTTTGTTAGGATGCATTTCTGTGATTACTATAACAAGGAAGTCAATGACCTTGCTTTCAACATCTTCCTTAACAGCCAGACGGCAGAAACTGGAGTTGATGTTATTGCAATGGCAGGAGGCAGAGGAATCCCATTATTCAAAGACTTTGTGGTCTATTCTAAAGATGGGGATGGTAGTGACCAGCTTTGGGTTGCTCTGCACCCAAATGATATTACAAAGCCCTCTTACCTTGATGCCATACTCAATGGTCTTGAGATTTTCAAGCTCAGTGACACAGACTTGTCTGGCCCTAATCCTACGCCTTCAGACATGCTCAGCAAGTTTGGAAGCGATGGGAAGTTTGCAGATGTCCACAAACATTTGAATAAGACCGTTGTTATTGGTGGCGCCGCGGGTGGCGCAGCTGGTTTTGCCTTGGTGGCTGCCATATGTCTTGCTCTCCATAGGAAGAAGAAATATGCGGGACAACACTCTCGCTCAAGCTGGCTCCCTGTACATGGCAACTCATCAGCAACCACCAAATCCTCCATATCTGCTAGGAGCGTGGGTAGCACCAACCTCACTGCCATGGCTCAAGGTCTTTGCCGCCATTTCTCCTTGCATGAGATGAAGCAAGCAACAAAGAACTTCAATGAGTCCAATGTTATTGGTGTTGGAGGATTCGGAAAGGTGTACAAGGGGACAGTTGATAATGGAACGAAAGTAGCCATCAAGAGATCAAATCCAGAATCTGAGCAAGGAGTTAATGAGTTCCAGACTGAGATTGAGATGCTTTCCAAGCTTAGACATAAGCATTTGGTGTCTCTGATTGGTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACTCTTTCATGGAAGCAAAGGTTGGAAATCTGCATTGGAGCTGCAAGGGGGCTTCACTACCTTCACACTGGAGCTAAGTACACCATCATTCATAGAGATGTCAAGACAACTAACATTCTCTTGGACGAAAACTGGGCTGCAAAGGTTTCGGATTTCGGCTTGTCAAAAACAGGTCCAAACATGAACAATGGACATGTGAGTACTGTGGTGAAGGGAAGTTTCGGCTACTTGGATCCTGAATACTTCAGAAGGCAGCAACTGACCGAGAAATCTGATGTGTACTCATTTGGGGTTGTTCTGTTTGAAGCTCTATGTGCTAGGCCTGTTTTGAATCCTAGTCTTCCAAAGGAACAGGTTAGTCTTGCAGAATGGGCACTTCTATGCAAAAGAAGGGGAACACTAGAGGAGATCATTGATCCTTCCTTAAAGGGAAAGATCAACCCAGAAAGCTTGAAGAAGTTTGTAGACACTGCTGAGAAGTGCTTGTCTGATGTCGGAGTCGAACGCCCTTCCATGAATGATCTGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGTCACACATTGGAGAGAGTGGGTTTGAAGAAATAA	2244	0.4051	MTARIFESEATYKFPIQPDKRYWLRLHFYPSNYGSHDSAYSYFSVTGNSITLLSNFSASITCLALSQAYIDREYSLAALGSDTLTLTFKPAEKIGAFAFINGIQLIQMPDLFGSASMVGFDQTLDAKSMNLQTMFRLNVGGKYISPTQDSGLTRMWYDDYPYLYGASTGITTSAPSDVKLNYQSMPQYTAPSDVYLTSRSMGSDKNLNMGYNLTWIFQIDPNSMYFVRMHFCDYYNKEVNDLAFNIFLNSQTAETGVDVIAMAGGRGIPLFKDFVVYSKDGDGSDQLWVALHPNDITKPSYLDAILNGLEIFKLSDTDLSGPNPTPSDMLSKFGSDGKFADVHKHLNKTVVIGGAAGGAAGFALVAAICLALHRKKKYAGQHSRSSWLPVHGNSSATTKSSISARSVGSTNLTAMAQGLCRHFSLHEMKQATKNFNESNVIGVGGFGKVYKGTVDNGTKVAIKRSNPESEQGVNEFQTEIEMLSKLRHKHLVSLIGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLSWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWAAKVSDFGLSKTGPNMNNGHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCARPVLNPSLPKEQVSLAEWALLCKRRGTLEEIIDPSLKGKINPESLKKFVDTAEKCLSDVGVERPSMNDLLXXXXXXXXXXXXXXXXXXXXXXCHTLERVGLKK	747

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc1335g00003	747	Gene3D	Transferase(Phosphotransferase) domain 1	533	725	-	-
	Stsc1335g00003	747	Pfam	Malectin-like domain	2	313	IPR024788	-
	Stsc1335g00003	747	Gene3D	-	1	109	-	-
	Stsc1335g00003	747	Gene3D	-	129	315	-	-
	Stsc1335g00003	747	Coils	Coil	710	714	-	-
	Stsc1335g00003	747	Pfam	Protein kinase domain	436	714	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc1335g00003	747	Gene3D	Phosphorylase Kinase; domain 1	407	504	-	-
	Stsc1335g00003	747	PANTHER	OS07G0166700 PROTEIN	420	714	IPR045272	GO:0004714\|GO:0006468
	Stsc1335g00003	747	ProSiteProfiles	Protein kinase domain profile.	435	741	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc1335g00003	747	FunFam	FERONIA receptor-like kinase	1	109	-	-
	Stsc1335g00003	747	SUPERFAMILY	Protein kinase-like (PK-like)	404	715	IPR011009	-
	Stsc1335g00003	747	FunFam	receptor-like protein kinase FERONIA	397	503	-	-
	Stsc1335g00003	747	FunFam	FERONIA receptor-like kinase	129	315	-	-
	Stsc1335g00003	747	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	567	579	IPR008271	GO:0004672\|GO:0006468
	Stsc1335g00003	747	FunFam	Receptor-like protein kinase FERONIA	532	722	-	-
	Stsc1335g00003	747	SMART	serkin_6	435	719	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc1335g00003	747	ProSitePatterns	Protein kinases ATP-binding region signature.	441	463	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc1335g00003	Stsc-Chr1335	6032	8638	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc1335g00003	1	714	Receptor kinase-like Gene Family	AT3G51550	51.984	0.0	711

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Stsc1335g00003		Malectin_like	5.2e-33	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc1335g00003	-		-	gmx:100815737	1000.73