Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1335g00001 ATGGCTCCCGATGCTTCCGACGCTCTTGCCGTGAGGCAGAAAGTTCAGCAATTTCTCAACGCTGCTCGAACCGGCAATCTTGATCTTCTCAAGAATTTGGCGACCCAGCTGGATGAGTCTAAGGATTTAGCCAAAACCGTGGACTCAATTAGAGACGCAAACAAGCGAGGAGCTCTGCACTTCGCCGCCCGAGAAGGCCAGACTGAGGTTTGCAAGTACTTGATTGAGGAATTGAAGCTCCATGTGGATTCAAAGGATGATGATGGGGAAACTGCTCTCATTCATGCTGCTCGTCAGGGGCACACTGCCACTGCTAAATATCTCATTGATTGTGGTGCTAATCCCACCATAGCTAGCAATTTAGGAGCTACTGCCTTGCACCATTCTGCAGGGATAGGAGATACTGAGCTGCTCAAGCATTTGCTTTCTAAAGGGATTAATCCTGATTTGGAAAGTGATGCTGGAACACCTTTGGTTTGGGCTGCTGGTCATGCCCAACAAGCTGCTGTCAGTGTTCTACTAGAACATGGTGCAAATCCCAATGCTGAAACCGATGATGGTATTACCCCACTCCTTTCATCTGTGGCAGCCAGCTCTCTGGCATGCTTAGAGGAGTTAATTCAGGCAGGTGGGAAAGTAAATATTAGTGCTGGTGGAGCAACTCCTTTACACATTGCAGCTGATAATGGAAGTCTGGAAATTATTAATTGCTTATTGAAAGCTGGAGCTGATCCTAACGTGTCCGATGAGG 751 0.4767 MAPDASDALAVRQKVQQFLNAARTGNLDLLKNLATQLDESKDLAKTVDSIRDANKRGALHFAAREGQTEVCKYLIEELKLHVDSKDDDGETALIHAARQGHTATAKYLIDCGANPTIASNLGATALHHSAGIGDTELLKHLLSKGINPDLESDAGTPLVWAAGHAQQAAVSVLLEHGANPNAETDDGITPLLSSVAASSLACLEELIQAGGKVNISAGGATPLHIAADNGSLEIINCLLKAGADPNVSDE 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1335g00001 250 ProSiteProfiles Ankyrin repeat profile. 88 120 IPR002110 GO:0005515
Stsc1335g00001 250 Gene3D - 122 189 IPR036770 -
Stsc1335g00001 250 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 8 250 - -
Stsc1335g00001 250 ProSiteProfiles Ankyrin repeat region circular profile. 218 250 - -
Stsc1335g00001 250 ProSiteProfiles Ankyrin repeat region circular profile. 88 114 - -
Stsc1335g00001 250 ProSiteProfiles Ankyrin repeat profile. 218 250 IPR002110 GO:0005515
Stsc1335g00001 250 Gene3D - 10 121 IPR036770 -
Stsc1335g00001 250 ProSiteProfiles Ankyrin repeat profile. 153 185 IPR002110 GO:0005515
Stsc1335g00001 250 SUPERFAMILY Ankyrin repeat 19 249 IPR036770 -
Stsc1335g00001 250 ProSiteProfiles Ankyrin repeat region circular profile. 121 153 - -
Stsc1335g00001 250 ProSiteProfiles Ankyrin repeat profile. 121 153 IPR002110 GO:0005515
Stsc1335g00001 250 Gene3D - 190 250 IPR036770 -
Stsc1335g00001 250 PRINTS Ankyrin repeat signature 122 137 IPR002110 GO:0005515
Stsc1335g00001 250 PRINTS Ankyrin repeat signature 169 183 IPR002110 GO:0005515
Stsc1335g00001 250 SMART ANK_2a 218 247 IPR002110 GO:0005515
Stsc1335g00001 250 SMART ANK_2a 153 182 IPR002110 GO:0005515
Stsc1335g00001 250 SMART ANK_2a 121 150 IPR002110 GO:0005515
Stsc1335g00001 250 SMART ANK_2a 186 215 IPR002110 GO:0005515
Stsc1335g00001 250 SMART ANK_2a 54 84 IPR002110 GO:0005515
Stsc1335g00001 250 SMART ANK_2a 88 117 IPR002110 GO:0005515
Stsc1335g00001 250 Pfam Ankyrin repeats (3 copies) 181 249 IPR002110 GO:0005515
Stsc1335g00001 250 Pfam Ankyrin repeats (3 copies) 20 117 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1335g00001 Stsc-Chr1335 164 1743 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1335g00001 64 249 Ion Channels AT4G32500 29.630 6.22e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1335g00001 - - gmx:100798118 426.787