Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc132g00008 ATGAACTGTCTTCAGAATCTTCCACGATCCTATGTTTCGCCCTTCCAAATTTCCACGCGCCACCACAAGAATCATCATATCTGCTCTGTTTCAATGGGAATCGTCAAGAATTCTCATAATCACAATCGGAGTATGGCAATGAAGTCTGCTTCTGGTTCCATACCGAGTGCAGAGACAAGTAGTTCTGAGATGAAAGAGGAAAAATCTGATACATATAGTAACAACATGACAGAAGCCATGGGTGCTGTTTTGACGTATAGGCATGAATTGGGAATGAACTACAACTTCATCCGTCCAGACTTGATAGTAGGATCATGCCTACAGACTCCTGAAGATGTTGACAAACTTCGGAAAATTGGAGTGAAAACCATATTTTGCTTGCAACAAGATCCAGACCTAGAATATTTTGGAGTTGATATCAATGCCATACGAGAATATGCCAAGGCATGTGGTGACATTCAGCACTTGCGTGCTCAGATAAGAGACTTTGATGGATTTGATTTACGGATGCGTCTTCCAGCTGTAGTTAGCAAATTATACAAGGCAATAAATTCAAATGGAGGCGTGACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCCACCGCATTGGCATATATGTTTTGGGTTCAGGGTTATAAACTCTATGAGGCTCATAATCTGCTCCTGAGCAAAAGGTCATGCTTTCCCAAACTGGATGCCATTAAAAGTGCGACTGCTGACATTCTTACAGGCCTCAGTAAGAAGTCTGTCACTTTATCATGGGAAGGCCGTAATTGCTCTTCAGTGGAAGTTTCAGGACTTGATATTGGATGGGGTCAGAGAATGCCCTTAAATTTTGATGACAAGCAGGGTTTGTGGTCTCTCAAGAGGGAATTGCCTGAAGGGCACTATGAGTACAAGTACATAGTTGATGGGGAATGGATATGCAACAAGGATGAGCTTATAACTTCTCCCAACAAAGATGGCCATGTCAACAATTTTCTCGACGTCCTTGAGGATCCTAGCAGTGTTCGCGCATCGCTTTGGGAGAGATTGACTGGCGACGATCCTGATCTCACAAAGGACGAAAGGCTGAGAATAAAAGAGTTCCTTGAAGCCTATCCTGATGCGACTGAGCAGTGA 1131 0.4332 MNCLQNLPRSYVSPFQISTRHHKNHHICSVSMGIVKNSHNHNRSMAMKSASGSIPSAETSSSEMKEEKSDTYSNNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRKIGVKTIFCLQQDPDLEYFGVDINAIREYAKACGDIQHLRAQIRDFDGFDLRMRLPAVVSKLYKAINSNGGVTYIHCTAGLGRAPATALAYMFWVQGYKLYEAHNLLLSKRSCFPKLDAIKSATADILTGLSKKSVTLSWEGRNCSSVEVSGLDIGWGQRMPLNFDDKQGLWSLKRELPEGHYEYKYIVDGEWICNKDELITSPNKDGHVNNFLDVLEDPSSVRASLWERLTGDDPDLTKDERLRIKEFLEAYPDATEQ 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc132g00008 376 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 90 235 IPR029021 -
Stsc132g00008 376 Gene3D Protein tyrosine phosphatase superfamily 86 366 IPR029021 -
Stsc132g00008 376 ProSiteProfiles Dual specificity protein phosphatase domain profile. 93 250 IPR020422 GO:0006470|GO:0008138
Stsc132g00008 376 CDD E_set_AMPKbeta_like_N 252 333 - -
Stsc132g00008 376 MobiDBLite consensus disorder prediction 44 72 - -
Stsc132g00008 376 Gene3D Immunoglobulins 248 338 IPR013783 -
Stsc132g00008 376 Pfam Dual specificity phosphatase, catalytic domain 136 231 IPR000340 GO:0008138|GO:0016311
Stsc132g00008 376 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 248 338 - -
Stsc132g00008 376 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 3 373 - -
Stsc132g00008 376 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 86 267 - -
Stsc132g00008 376 CDD DSP_laforin-like 92 239 IPR045204 GO:0019203
Stsc132g00008 376 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 170 228 IPR000387 GO:0016311|GO:0016791
Stsc132g00008 376 MobiDBLite consensus disorder prediction 44 60 - -
Stsc132g00008 376 Pfam Glycogen recognition site of AMP-activated protein kinase 253 335 IPR032640 -
Stsc132g00008 376 SMART dsp_5 93 243 IPR020422 GO:0006470|GO:0008138
Stsc132g00008 376 SUPERFAMILY E set domains 252 333 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc132g00008 Stsc-Chr132 48614 53462 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc132g00008 92 373 Protein tyrosine phosphatase (PTP) family AT3G52180 69.858 5.01e-153 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc132g00008 - - gmx:100804010 613.994