Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc132g00003 ATGGACGAAGGACAAGAGAATCAAGCTATTATTACCAAGAAAAAACCTTCCACTCATCAGGACATTTCTGATGAGTTAGATCTGAAAATAAAGAAGTATCTCAGAGGAGAAGCTGCTTCTTTTGAGGATTTGAAGGATAGAAAGCTCAAGCGTCAACTATCTGTCAGAGAAGAATTATATGGCAATGCTGCGAAAGCTGCTGCCAAGGCAGAGAAGTGGCTTATGCCCAATGAGGGAGGCTATCTAGAGGCTGAAGGCATAGAGAAGACATGGAGGATCAAACAGGAGGCTATAGCAAAAGAAGTAGGTCTTGTAAACTTAAGGAACCTATACGATATTGTTTTACCAGATCTTGGTCCATATACCCTGGATTTTACTTCAAGTGGCCGTTATATGGCTGTTGGTGGTCGTAAAGGCCACCTTGGAATCGTGGACATGATAAATCTTAGCCTAATCAAAGAACTTCAGGTAGGAGAAACAGTGCGGGATGTGGTATTCTTGCATAATGAACTCTTTTTTGCTGCTGCCCAGAAGAAGTTTGTTTACATGTATAATCGAGAAGGCACTGAAATTCACTGCCTCAGGGAACACGGTGCAGCATTAAAGCTTCAGTTTCTGAAAAACCATTTTCTGTTGGCTTCAGTCAATAAATTTGGGCAACTTCATTATCAAGATATTACAATGGGTGATATGGTGGGTAATTTTCGAACTGGCCTAGGACGCACAAATGTGATGGAAGTAAACCCCTTCAATGCGGTTGTTGGTCTGGGTCACGCAGGTGGTACAGTTACAATGTGGAAGCCAACTAGTTCTGCTCCCCTTGTGAAGATGCTATGTCATCATGGGCCTGTTTCAGCGCTAGCATTCCACTCAAACGGCCACTTAATGGCCACAGCCGGTAAAGACAAGAGGATTAAGCTTTGGGACTTGAGGAAATTTGAGCCTCTTCAAACCATAACGGGCCACGCAAATACTTTGGATTTTAGTCAAAAGGGCTTGCTTGCTTGCGGCAGTGGTTCGTTTGTACGGGTTATGAATGATGTTTCTGGCACACAGAACTATTCTAATTACATGAATCATTCCATGGCGAAAGGTTATCAGATAGGAAGATTAGCATTTCGGCCATATGAAGATGTTTTAGCCATTGGCCATTCCATGGGTTGGTCTAGTATTCTTATTCCAGGTGCTGGAGAACCCAACTTTGACACATGGGTTGCCAATCCATTTGAAACATCTAAACAGAGGAGAGAGAAGGAAGTGCGGTCTCTTCTGGATAAACTTCCAGCCGAGACTATCATGCTCGATCCAAGCAAGATTGGTACGGTGAAATCGACAAGGAGAGAGAAGGTGACAAAACAAGAGAGGGAGACCGAAATTGAAGCCGCAGTTGAAGCTGCCAAGAGCACAAAACTGAAGAATAAAACAAAAGGAAGAAATAAGCCAGGTAAAAAGATGCAGAAGAAGCAGGATGCAATTGCTAGAGTGAAGAGGCCTTACTTAGAGGAGAAGATTAACGAGGAACAAAACATTTCCCAAAAGAAGCAGAAAACCAGTGAGAATGTTGAATTACCAAAATCTTTACAGCGGTTTGCTCGTAAGAAATCATCATGA 1611 0.4271 MDEGQENQAIITKKKPSTHQDISDELDLKIKKYLRGEAASFEDLKDRKLKRQLSVREELYGNAAKAAAKAEKWLMPNEGGYLEAEGIEKTWRIKQEAIAKEVGLVNLRNLYDIVLPDLGPYTLDFTSSGRYMAVGGRKGHLGIVDMINLSLIKELQVGETVRDVVFLHNELFFAAAQKKFVYMYNREGTEIHCLREHGAALKLQFLKNHFLLASVNKFGQLHYQDITMGDMVGNFRTGLGRTNVMEVNPFNAVVGLGHAGGTVTMWKPTSSAPLVKMLCHHGPVSALAFHSNGHLMATAGKDKRIKLWDLRKFEPLQTITGHANTLDFSQKGLLACGSGSFVRVMNDVSGTQNYSNYMNHSMAKGYQIGRLAFRPYEDVLAIGHSMGWSSILIPGAGEPNFDTWVANPFETSKQRREKEVRSLLDKLPAETIMLDPSKIGTVKSTRREKVTKQERETEIEAAVEAAKSTKLKNKTKGRNKPGKKMQKKQDAIARVKRPYLEEKINEEQNISQKKQKTSENVELPKSLQRFARKKSS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc132g00003 536 ProSitePatterns Trp-Asp (WD) repeats signature. 296 310 IPR019775 -
Stsc132g00003 536 FunFam U3 small nucleolar RNA-associated protein 7 109 391 - -
Stsc132g00003 536 SMART WD40_4 106 145 IPR001680 GO:0005515
Stsc132g00003 536 SMART WD40_4 270 309 IPR001680 GO:0005515
Stsc132g00003 536 SMART WD40_4 312 346 IPR001680 GO:0005515
Stsc132g00003 536 SMART WD40_4 148 185 IPR001680 GO:0005515
Stsc132g00003 536 SUPERFAMILY WD40 repeat-like 119 385 IPR036322 GO:0005515
Stsc132g00003 536 Pfam BING4CT (NUC141) domain 357 435 IPR012952 -
Stsc132g00003 536 PANTHER WD-REPEAT PROTEIN BING4 6 532 IPR040315 -
Stsc132g00003 536 MobiDBLite consensus disorder prediction 468 536 - -
Stsc132g00003 536 SMART BING4CT_2 356 436 IPR012952 -
Stsc132g00003 536 MobiDBLite consensus disorder prediction 484 513 - -
Stsc132g00003 536 MobiDBLite consensus disorder prediction 1 21 - -
Stsc132g00003 536 Gene3D - 104 235 IPR015943 GO:0005515
Stsc132g00003 536 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 277 311 - -
Stsc132g00003 536 Gene3D - 236 385 IPR015943 GO:0005515
Stsc132g00003 536 Pfam WD domain, G-beta repeat 278 309 IPR001680 GO:0005515
Stsc132g00003 536 Coils Coil 500 520 - -
Stsc132g00003 536 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 318 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc132g00003 Stsc-Chr132 7916 12106 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc132g00003 119 349 U-box Gene Family AT1G04510 24.898 6.43e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc132g00003 K14768 - gmx:100802940 883.248