Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1325g00001 ATGATCGATCACGGCGACGGAATCTCACCGTCACTTGATTTCGAGAATCTGAAAGTGATAAGCGCGGTGGGGCGCGGGGCGAAGGGAGTNNNNNNNNNNGTCCCGGTGATCCCGATCATGATCGATCACGGCGACGGAATCTCACCGTCACTTGATTTCGAGAATCTGAAAGTGATAAGCGCGGTGGGGCGCGGGGCGAAGGGAGTGGTGTTTCTAGCGAGAGCCGGTGACCGGTCATCGTGCAGCGAGTATGTGGCTCTGAAGGCTATATCGAAGGCTCTGATTCAGAAGAAGGAAGAGACTTACGGAGAGTATAAGAGGGTTTCGTTGGAACTTGATGTGCTACGTCGTTTTGATCACCCGCTTTTGCCGCGGTTGCGAGGGGTTTTGGAGACCGATGGAATCGTTGGATTCGCTATGGATTTCTGTCACGGTGGTAACCTCCATTCTCTCAGGAAGAAACAAACTGAGAAAATGTTCTCCGATGATACCATCAGATTTTACGCGGTGGAATTGGTCCTCGCTTTGGAGTACTTGCATGGTTTGGGAATAGTGTACAGAGACTTAAAGCCAGAAAACGTGATGATCCAAGAAAACGGTCACGTAATGCTCGTTGATTTCGATCTCTCCAAAAAGCTCAAGCCAAAATCTCCACAATCAACGAGTCACAACTCGTCGCCGAGTCCTAACTCGGCGGTCAAGAAACCCGCAAGGAAGCGACGGTTATCGTGGTTCAACATAAACTGTAACTCAGGCATCTTACCGTGCGAGTTGGACTCAGTAGAACCTCAACCCGAGTCAACTCGTCGGGGTGAGTCAGACTCGGTAGAGAAATCGAACTCGTTCGTTGGAACGGAAGAGTACGTGGCACCTGAGGTTGTAGCAGGGCACGGTCACGGTTTCGGCGTTGATTGGTGGTCACTCGGCGTTGTTTTGTACGAAATGTTATACGGAACGACGCCGTTTAAGGGTGAGAATAGAAAAGAAACGTTTATTCGGATATTAACGAAGGAGCCGGAGTTGACGGGGGAGAAGACGGCGTTACGGGATTTTATTGGTAGGTTGTTAGAGAAGGATCCTGACCGTCGGATAACAGTTGGCGAGATCAAGAGTCATGATTTCTTTAAGGGAGTTAAGTGGGACACGGTGTTGCAAATAGCGAGACCACCTTATATTCCTTGCAATGAGGTTGAGGACGCAGTGGGGCTTAGCAAAAAGGAAGTGGAGATTTTTGTTCATGGAGTGTTTTTTCCAGAGGGAAATGATGATGGAGGAGAGAAAAATAATAACAAAGTGGAGGAAAAAAAGAATGGTGGAAATGGGGAGAATAATAGTAACAAGAAAGTGTGGTCTGACAAGTTGAGCCATAGACCCACTGAGAATGATGATTTTTTAATTTTTTGA 1404 0.4765 MIDHGDGISPSLDFENLKVISAVGRGAKGVXXXVPVIPIMIDHGDGISPSLDFENLKVISAVGRGAKGVVFLARAGDRSSCSEYVALKAISKALIQKKEETYGEYKRVSLELDVLRRFDHPLLPRLRGVLETDGIVGFAMDFCHGGNLHSLRKKQTEKMFSDDTIRFYAVELVLALEYLHGLGIVYRDLKPENVMIQENGHVMLVDFDLSKKLKPKSPQSTSHNSSPSPNSAVKKPARKRRLSWFNINCNSGILPCELDSVEPQPESTRRGESDSVEKSNSFVGTEEYVAPEVVAGHGHGFGVDWWSLGVVLYEMLYGTTPFKGENRKETFIRILTKEPELTGEKTALRDFIGRLLEKDPDRRITVGEIKSHDFFKGVKWDTVLQIARPPYIPCNEVEDAVGLSKKEVEIFVHGVFFPEGNDDGGEKNNNKVEEKKNGGNGENNSNKKVWSDKLSHRPTENDDFLIF 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1325g00001 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 184 196 IPR008271 GO:0004672|GO:0006468
Stsc1325g00001 467 MobiDBLite consensus disorder prediction 421 462 - -
Stsc1325g00001 467 MobiDBLite consensus disorder prediction 214 232 - -
Stsc1325g00001 467 FunFam Serine/threonine-protein kinase OXI1 147 215 - -
Stsc1325g00001 467 MobiDBLite consensus disorder prediction 424 441 - -
Stsc1325g00001 467 SMART serkin_6 56 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1325g00001 467 Pfam Protein kinase domain 58 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1325g00001 467 Pfam Protein kinase domain 277 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1325g00001 467 Gene3D Transferase(Phosphotransferase) domain 1 276 394 - -
Stsc1325g00001 467 SUPERFAMILY Protein kinase-like (PK-like) 54 397 IPR011009 -
Stsc1325g00001 467 Gene3D Phosphorylase Kinase; domain 1 56 146 - -
Stsc1325g00001 467 ProSiteProfiles Protein kinase domain profile. 56 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc1325g00001 467 MobiDBLite consensus disorder prediction 213 233 - -
Stsc1325g00001 467 PANTHER FLIPPASE KINASE 1-RELATED 51 399 - -
Stsc1325g00001 467 Gene3D Transferase(Phosphotransferase) domain 1 147 219 - -
Stsc1325g00001 467 FunFam Serine/threonine-protein kinase OXI1 277 394 - -
Stsc1325g00001 467 MobiDBLite consensus disorder prediction 258 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1325g00001 Stsc-Chr1325 4957 7867 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1325g00001 49 416 AGC Kinase Gene Family AT4G13000 59.783 3.89e-146 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Stsc1325g00001 Pkinase 1.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1325g00001 K20714 - gmx:100785773 555.058