Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1322g00003 ATGGATGGTTTAAAATCCAGGGGTTCAGTTGTAGTTATAGGTGCGACGAACCGTCCTGATGCTGTTGACCCAGCACTTAGGCGGCCTGGAAGATTTGATCGGGAAATTTATTTCCCACTGCCATCCACTGAGGACAGAGCTTCCATTCTTTCACTTCACACTAAGAAGTGGCCTAAACCTATTACTGGGTCCTTGCTTGAGTGGATTGCCAAAAAAACTCCTGGCTATGCTGGTGCTGATCTTCAGGCTCTCTGTACTCAAGCGGCTATCAATGCCTTGAAGAGGAATTTCCCATTGCAAGAAGTGTTGTCCTTAGCGGAAGAAAAGCATTCTGGTTGGAAGAACCTTACCCTACCATCCTTTGCAGTGGAGGAGAGGGATTGGTTAGAGGCATTTTTGCATTCCCCACAACCATGCTCCCGGAGAGAAGCAGGAAATGCCGCTAATGACGTTGTATGCTCCGCTCTTCCTGTCCACCTCATACCTTGTTTATTGGGGCCATTGTGCACACTTCTTGTATCTCTTTATCTTGATGAACATCTATGGTTGCCACCTCCTTTATCTAAAGCTGTAACAGTGATTAAGAATGAAGTGGTTTCTGCTATAGACAAAAAGAAAATGGCTGCTGATCACTGGTGGTTGCACATTGATGACTTACTACGAGTAAAAAATGTTGCTTCTGACGTGAAGAGCAAGCTCATGTGTTTGGGCATTTTATCTGCAACTGATGGCTTTGGTGGTTCTCCTGATAATGCAGATGACACAGAAGATAACAATATGAATCCTGAGCCCTCCATAAAGAACCATTTGGGCATGCGGAGTGGTTTGTTTCTAGACAAGTCATTTGCATCTACTAATAAATCAGGATTTAGAATATTGATTTCTGGAAATCCCCGATCTGGCCAGAGACATCTTGCTTCCTGCTTTCTTTACTGCTTTGTGGGGAGTATTGAAATACAGAAAATTGATATGGCAACTGCTTCTCAAGAAGGGCATGGAGATGTAGTGCAAGGAATTGCACAAATATTATGCTCTGAGAAGGAAAGTGAGTTCAATACAGAACCAAACTCTGCAGAGATTACGGAAGGCCAGGCAAACAAGAAGGCTTCACATGCCTGGATGTCATTTATTGAGCAGGTGGAGTCCATTGGTGTATCCACGTCCTTGATGATTCTGGCTACTTCAGAAGTTCCGTATACAGAACTTCCAAGTAAGATAAGGGAATTTTTCAAGAGTTATCAATCTAAAGACAGCCAATCAACTCCTTTGCAGCAAACAATCCCTCGATTCTCTCTGCATCTTGATAGTAATTTTGATCGTGACATGGTGATCAATCTATCTGTAGAAGAGCTACTGAGAAATTTAGTTGAGCAGCAGATTCAGTTGATTCATCAGAGCTCTCATGTTCATATGGGTGTCCAAAAGGTTTCTGCTGATGTTTGTGAAGACAAGGTTTGCCAGAGTAAAGATAATGGATCAGTTGATGAAGAGAAGAATGAAACCCAAGTTCCTAAATCGACATCAACACCTCCACCACCGCCACATGATGGTAGGTCTCTGAAGGAAAAGTCAACCTTGTCACTAGCAATATCCACATTTGGTTATCAAATTCTTCTTTTCCCACATTTTGCTGAACTTTGTTGGGTCACATCAAAACTCAAAGAAGGTCCTTGTGCTGATGTAAGTGGACCATGGAGGGGCTGGCCTTTTAATTCCTGTATAATTCGTCCCAATAATTCACTAGACAAGTCAGCAGTTCCTGGTAGCTCCAATGGTGTTAAAAGCAAAGAAAGATCTGGTTTAGTTAGAGGCTTGATTGCCGTTGGTTTATCCGCTTACAGGGGTGTTTATAAGTCAGCCAGAGAAGTTTCTCTTGATGTGAGAAAAGTTCTTGAGATCCTAATTGAGAACATCAATGCAAAAATTCAAGCTGGGAAAGACAGATATCAATATCTTCGCATTTTGTCACAAGTGGCTTATTTGGAAGATATAGTTAACAATTGGGCTTATGCATTGCTCAGTATGGATAAGGATTCCTCGGAGCCTAAATCAAAAGTCACGTCGGCAAGTGATGGGTTAAACAGTCATCTCTCGTGTGAAGATCACCAAGCTGGAATTAAAGATGTTCATATGAACGGTGATGATTTGGAGACTCCAGGGAGAAGTTGTAAGGAAACTCATGCCGAAACATCTGAATCTCCTGCCTTGAATGAGAAAAATGATTATACAGATAAACTTGATCATGATGGTAGAGATACAAATACAATCTCTAAAGAGTGTCTACTAGATGATTCTTTAAACAAGCATTCTAATGACTCTGCTGCTGCAAACCAACCCGTTGATCCATCCCCAAATCAAGAGAATGGAATGCTATCCCGTGAGGTGGCATGTGGAGATGTCAGTATGTCAGAAGAACTAGGTAAATCCACATTCACACACACTGCTGTCGTTTCTGAAAATGGACATCACACTGCCTTAGAACAAGAGGGTCTTGAAGGAGGTACTGTAAGTACGGTCTCTAATCAGCCCCCGACCATGTCCACAGAGGAGACTGGTGTAAGTGATGTTTACTCTCGCAAACATGAGAATGCTACAGGTATCGATGTCTCTTTAAGTAATGGCAGTGACCATGCCGAACCGGCAGCCATTTGTGTATACCAATGTTGCCCCAGATGTCTTCAGAGCCTTTATCATGCAATACACAAGCTTCTTACACGTGAGTTGAGCGATAGGCATAGAACAGTAGAGGATGTCCATGATGCCATTTCATCATTATCTGTGGATCTTATTTCAGCAATTAGAAAATGTCACATTGAAGATCTCAGTGATTTATCTAACCAAACCTCTAAGAAAGAAAAGCACGGACTAACTCTGAACCTGAGAACATGTGACCCCAGAAACCAAGACAAGGATTTTGTGGCAGCTGAGTGTGTTACTCACTCAACAAGCGAGGATGCAGCTGCAACCAAAGATGAGGTAATGAATGAACCATTGAAGCTTGATTTAAAATTTATATTCAAAGAAGGTGTTCTGGTTCCTATGAACACTGACAAAGATGTTTCTCTTCACTGTAAATTTGAAACCCTGTGCCTCTGTTCTGTTAGAGAGTTGATAGTAATGACCAAGAGCCCTTTTGATTGA 3141 0.4202 MDGLKSRGSVVVIGATNRPDAVDPALRRPGRFDREIYFPLPSTEDRASILSLHTKKWPKPITGSLLEWIAKKTPGYAGADLQALCTQAAINALKRNFPLQEVLSLAEEKHSGWKNLTLPSFAVEERDWLEAFLHSPQPCSRREAGNAANDVVCSALPVHLIPCLLGPLCTLLVSLYLDEHLWLPPPLSKAVTVIKNEVVSAIDKKKMAADHWWLHIDDLLRVKNVASDVKSKLMCLGILSATDGFGGSPDNADDTEDNNMNPEPSIKNHLGMRSGLFLDKSFASTNKSGFRILISGNPRSGQRHLASCFLYCFVGSIEIQKIDMATASQEGHGDVVQGIAQILCSEKESEFNTEPNSAEITEGQANKKASHAWMSFIEQVESIGVSTSLMILATSEVPYTELPSKIREFFKSYQSKDSQSTPLQQTIPRFSLHLDSNFDRDMVINLSVEELLRNLVEQQIQLIHQSSHVHMGVQKVSADVCEDKVCQSKDNGSVDEEKNETQVPKSTSTPPPPPHDGRSLKEKSTLSLAISTFGYQILLFPHFAELCWVTSKLKEGPCADVSGPWRGWPFNSCIIRPNNSLDKSAVPGSSNGVKSKERSGLVRGLIAVGLSAYRGVYKSAREVSLDVRKVLEILIENINAKIQAGKDRYQYLRILSQVAYLEDIVNNWAYALLSMDKDSSEPKSKVTSASDGLNSHLSCEDHQAGIKDVHMNGDDLETPGRSCKETHAETSESPALNEKNDYTDKLDHDGRDTNTISKECLLDDSLNKHSNDSAAANQPVDPSPNQENGMLSREVACGDVSMSEELGKSTFTHTAVVSENGHHTALEQEGLEGGTVSTVSNQPPTMSTEETGVSDVYSRKHENATGIDVSLSNGSDHAEPAAICVYQCCPRCLQSLYHAIHKLLTRELSDRHRTVEDVHDAISSLSVDLISAIRKCHIEDLSDLSNQTSKKEKHGLTLNLRTCDPRNQDKDFVAAECVTHSTSEDAAATKDEVMNEPLKLDLKFIFKEGVLVPMNTDKDVSLHCKFETLCLCSVRELIVMTKSPFD 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1322g00003 1046 Gene3D - 41 98 - -
Stsc1322g00003 1046 MobiDBLite consensus disorder prediction 766 790 - -
Stsc1322g00003 1046 Pfam ATPase family associated with various cellular activities (AAA) 1 40 IPR003959 GO:0005524|GO:0016887
Stsc1322g00003 1046 Gene3D - 1 40 IPR027417 -
Stsc1322g00003 1046 PANTHER AAA DOMAIN-CONTAINING 1 947 IPR045199 -
Stsc1322g00003 1046 MobiDBLite consensus disorder prediction 831 853 - -
Stsc1322g00003 1046 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 41 133 - -
Stsc1322g00003 1046 FunFam Bromodomain protein 1 40 - -
Stsc1322g00003 1046 Pfam AAA+ lid domain 66 98 IPR041569 -
Stsc1322g00003 1046 MobiDBLite consensus disorder prediction 829 854 - -
Stsc1322g00003 1046 MobiDBLite consensus disorder prediction 487 521 - -
Stsc1322g00003 1046 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 98 IPR027417 -
Stsc1322g00003 1046 MobiDBLite consensus disorder prediction 767 790 - -
Stsc1322g00003 1046 MobiDBLite consensus disorder prediction 487 502 - -
Stsc1322g00003 1046 ProSitePatterns AAA-protein family signature. 10 28 IPR003960 GO:0005524|GO:0016887
Stsc1322g00003 1046 MobiDBLite consensus disorder prediction 710 752 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1322g00003 Stsc-Chr1322 7157 11143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1322g00003 1 102 Calmodulin-binding Proteins AT3G56690 46.078 5.60e-20 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1322g00003 - - ahf:112772466 1832.77