Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1314g00003 ATGATGTCTGAAGAACCCTTTTCTTCTGTTCTTCCTCCCAATAATACCACCTTGGTTCATCTCCAACACCCAAACTCATCAAACCCTAGTAGCAACAATAACCCAAAACCTAATTCAAATCAACCAACCAGCAAGAAAAGAAGAAATCTTCCAGGAACACCAGATCCGGATGCAGAAGTGATAGCTATGTCGCCGAAGTCTCTAATGGCGACGAACCGTTTCGTGTGCGAAATCTGCAACAAGGGTTTCCAGAGGGACCAGAACTTGCAGCTGCATAGGAGAGGACACAACCTACCATGGAAGCTGAAGCAGAGAAACAAGGAAGAGAAAGTGAGGAAGAAGGTGTACGTGTGCCCGGAGAAGTCTTGCGTGCACCACGACCCCTCTAGAGCACTGGGGGACCTCACAGGTATCAAGAAACACTTTAGCAGGAAGCATGGAGAGAAGAAATGGAAGTGTGACAAGTGCTCCAAGAAATACGCTGTTCATTCTGATTGGAAGGCCCATACCAAGATTTGTGGGACTAGGGAGTACAAATGCGACTGTGGCACCATTTTTTCGAGGAAGGACAGCTTCATAACACACAGAGCATTCTGTGATGCATTGGCTGAAGAAAGTGGAAGAATAAGAACAGTTCCAACAGCTTTGAGCAGCTTGATGATGAGTAGAAGAGATCATCATAATCATCATCATCAATTGGGAGCAAGTAGTAGAATCATACCTCATCACATTCTTCCTAGTGCTGGATTTCACTCAGAATTTGGTGGTGGTGGTTCATCAGTGTCATTAATGGGGAAGAACCTGCAGAGCCATGGTGATTATTATTATTCAGATCAGAAGGCGGTGATGATGATGAAGAACAACAACAACAATAGCAATAGCAACAACAATGTTCAGATTCCAGTGTGGCTAGACCAGGTGAATAACAATCATCATCATGTTAGTGGCATTTCATCAAACACTAGTAGTGCATGCACCATTGGCAATAGTATTATCATGCCTCCTGAGTTTGGGTCTACTACTGCTCAACTACTACAACATCAACAATGGCAGCAGAATCCAGAAGCATCATCATCATCATTATTCACAAATCATAATAATAATAATAATAATAATAATAATAATAACAATGTGGCTATGATGATGATGATGCCAGGAGGAGGAGGAGGAATAGGAGGAGGACTAAAGCAAGAACAAGAAGAGATGTTCTATTTTGGTGGTGCTAGTAGTAACCATCATCATGAGTTGGTGAATTTGGAAGCATCATTATCAGCAACAAGGAGGTCAAAGAATGATAATAAAGAAGATGATGAACTGGGTTTAACGAGGGATTTTCTTGGAGTTGGAGAAGATGAATCAACAATGAGTAACAGGCCATTGATGTTGCAGCAACAGCTAGCTGAGTTCACAGCCATGGATCCTATGCATCATCATCAAACTCACTTCAGTGGACATTACTGTTAA 1464 0.4221 MMSEEPFSSVLPPNNTTLVHLQHPNSSNPSSNNNPKPNSNQPTSKKRRNLPGTPDPDAEVIAMSPKSLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNKEEKVRKKVYVCPEKSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVHSDWKAHTKICGTREYKCDCGTIFSRKDSFITHRAFCDALAEESGRIRTVPTALSSLMMSRRDHHNHHHQLGASSRIIPHHILPSAGFHSEFGGGGSSVSLMGKNLQSHGDYYYSDQKAVMMMKNNNNNSNSNNNVQIPVWLDQVNNNHHHVSGISSNTSSACTIGNSIIMPPEFGSTTAQLLQHQQWQQNPEASSSSLFTNHNNNNNNNNNNNNVAMMMMMPGGGGGIGGGLKQEQEEMFYFGGASSNHHHELVNLEASLSATRRSKNDNKEDDELGLTRDFLGVGEDESTMSNRPLMLQQQLAEFTAMDPMHHHQTHFSGHYC 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1314g00003 487 MobiDBLite consensus disorder prediction 349 374 - -
Stsc1314g00003 487 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Stsc1314g00003 487 SMART c2h2final6 74 96 IPR013087 -
Stsc1314g00003 487 SMART c2h2final6 151 171 IPR013087 -
Stsc1314g00003 487 SMART c2h2final6 116 146 IPR013087 -
Stsc1314g00003 487 MobiDBLite consensus disorder prediction 8 48 - -
Stsc1314g00003 487 FunFam protein indeterminate-domain 12-like 53 122 - -
Stsc1314g00003 487 MobiDBLite consensus disorder prediction 1 59 - -
Stsc1314g00003 487 Pfam Zinc finger, C2H2 type 74 96 IPR013087 -
Stsc1314g00003 487 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Stsc1314g00003 487 Gene3D Classic Zinc Finger 53 127 - -
Stsc1314g00003 487 FunFam protein indeterminate-domain 5, chloroplastic-like 129 208 - -
Stsc1314g00003 487 SUPERFAMILY beta-beta-alpha zinc fingers 73 171 IPR036236 -
Stsc1314g00003 487 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 28 465 IPR031140 -
Stsc1314g00003 487 Gene3D Classic Zinc Finger 130 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1314g00003 Stsc-Chr1314 10933 13092 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1314g00003 14 208 IDZ Gene Family AT3G50700 77.436 1.35e-111 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc1314g00003 zf-C2H2 0.0049 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1314g00003 K25870 - gmx:100817691 388.652