Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc130g00007 ATGATTATGGAGAATCTGTGTCCCGCACTCATTCGCCCTCACACAAATCTCTTCTCTTCTGCTTCACGGATCAGAAGAAAAAATTTCGGAAAGCTCATCACACAACTGTTCAAAATGGGAGTGGCTCAGAACATTCAAGATGAGGAGACCTTGGAGATAGGAATGGAATACAGAACTGTGTCTGGAGTCGCTGGACCGTTGGTTATCCTTGATAAAGTTAAGGGACCCAAATTTCAAGAGATTGTTAATATTCGCTTGGGAGATGGAACTACTCGTCGTGGACAAGTTCTGGAAGTTGATGGCGAAAAGGCTGTTGTTCAGGTTTTTGAAGGTACATCTGGGATTGACAATAAATTTACAACAGTACAATTTACTGGAGAGGTGTTGAAAACTCCCGTCTCACTAGACATGCTTGGGCGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGCCCACCAATATTACCCGAGGCTTACTTGGACATATCAGGAAGTTCTATCAATCCCAGTGAGAGAACTTATCCTGAAGAAATGATACAGACAGGAATATCTACAATTGATGTTATGAATTCTATTGCCAGAGGTCAAAAGATCCCCCTGTTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATTTGCCGTCAGGCTGGTTTAGTCAAGCGATTGGAGAAAACAGATAATCTTCTTGAGCATGGAGGAGAAGACGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGCAAACGATCCCACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACTACTGCTGAATATTTGGCCTATGAATGTGGCAAGCACGTTCTTGTGATACTCACAGATATGAGTTCTTACGCCGATGCTCTTCGTGAGGTATCTGCTGCCAGAGAAGAAGTACCAGGAAGACGTGGTTATCCTGGTTACATGTATACTGATCTTGCAACAATTTATGAACGTGCTGGAAGAATTGAGGGTCGAAAAGGCTCTATTACACAAATTCCAATTCTAACCATGCCAAATGATGATATTACGCATCCAACTCCTGATCTTACAGGATATATCACTGAGGGGCAGATTTACATTGACAGGCAGTTGCATAACAGACAGATATACCCACCAATCAATGTGCTTCCATCACTCTCTCGGTTGATGAAGAGTGCCATTGGTGAGGGAATGACTAGAAAGGATCATTCTGATGTGTCCAACCAGCTATATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCCGTGGTTGGAGAAGAAGCACTTTCATCGGAGGATCTGCTGTATCTGGAATTCTTGGACAAGTTCGAGAGGAAGTTTGTCACCCAGGGAGCCTATGACACTCGCAATATCTTCCAGTCACTAGATCTCGCATGGACTTTGCTGCGGATTTTCCCCCGAGAGCTTCTTCATCGTATTCCAGCCAAGACTCTGGATGCTTTTTACAGCCGTGATGCTGGTAACTGA 1494 0.4357 MIMENLCPALIRPHTNLFSSASRIRRKNFGKLITQLFKMGVAQNIQDEETLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKTDNLLEHGGEDDNFAIVFAAMGANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRKDHSDVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVTQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDAFYSRDAGN 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc130g00007 497 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 251 494 IPR022879 -
Stsc130g00007 497 CDD V_A-ATPase_B 128 394 - -
Stsc130g00007 497 Pfam ATP synthase alpha/beta family, beta-barrel domain 60 126 IPR004100 GO:0046034|GO:1902600
Stsc130g00007 497 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 183 386 IPR000194 GO:0005524
Stsc130g00007 497 ProSitePatterns ATP synthase alpha and beta subunits signature. 377 386 IPR020003 GO:0005524
Stsc130g00007 497 Hamap V-type ATP synthase beta chain [atpB]. 54 495 IPR022879 -
Stsc130g00007 497 CDD ATP-synt_V_A-type_beta_N 56 127 - -
Stsc130g00007 497 CDD ATP-synt_V_A-type_beta_C 396 490 - -
Stsc130g00007 497 Gene3D - 65 496 - -
Stsc130g00007 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 130 392 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc130g00007 Stsc-Chr130 37837 43442 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc130g00007 38 497 Primary Pumps ATPases(2) AT4G38510 90.593 0.0 889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc130g00007 K02147 - gmx:100814088 869.766