Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc130g00003 ATGTTATCAGAGTTGATGAACTTTCTGAGGGCCTGCTTTCGGCCGAGTTCGGAAGGATACACGCGTGGAGGTGCTGATGCCGGAGGCAGACAGGATGGACTATTGTGGTACAAAGNNNNNNNNNNAGGGCAGCACTCGAATGGTGAATTTTCGATGGCGGTAGTACAAGCCAATAACCTGCTGGAGGATCAGAGCCAGCTTGAATCAGGCTCTTTGAGCTCCAATGAGACTGGCCCTTATGGTACCTTTGTTGGTGTCTATGATGGCCATGGAGGGCCCGAGACATCACGGTTCATCAATAATAACCTGTTTCACCATCTCAAGAGATTTACGGCAGAGCAACAATCAATGTCAGCGGATGTAATTCGCAAGGCATTCCAGGCAACAGAAGATGGATTTACGTCACTTGTTGCCAGACAGTGGCCATTGAACCCACAAATCGCAGCTGTCGGTTCATGCTGTCTAGTTGGTGTTATTTGTAATGGAACCCTTTATGTAGCGAATCTTGGTGATTCCCGAGCTGTTTTGGGAAGACTAGTTAAAGCAACTGGTGAGGTTTTGGCTATGCAATTATCATCAGAACACAATGCATCTATAGAGTCTGTAAGACAAGAGCTTCACTCTTTGCACCCTGATGATTCAAATATTGTTGTTTTAAAGCATAATGTATGGCGTGTGAAGGGCCTCATTCAAGTTTCGAGATCTATCGGTGATGTATATTTGAAAAAGGCGGAGTTCAATAGAGAACCTCTATACGCCAAGTTTCGACTCCGTGATCCAATCAAGAGACCAATTCTGAGCTCAGAACCATCAATATCTGTGCATCCATTGCTTCCACAAGATCAATTTGTGATATTCGCATCGGATGGTCTCTGGGAGCACCTTAGCAATCAGGAAGCAGTCGATATAGTTCAAAACAATCCTCGCAGTGGAATTGCAAGGAGGCTGGTCAAAACCGCGCTTCAAGAAGCGGCAAAGAAAAGAGAGATGAGATATTCAGACTTAAAGAAGATTGACCGTGGAGTCCGCCGGCACTTCCACGACGATATCACCGTGGTTGTTGTCTATCTTGATTCGAATCTCGCTAGCAGGGCAAGCGCTGGCAAGTTCCCTAGTGTTTCTATCCGAGGAGGTGGAGTTAACTTGCCCCCTAACACACTGGCACCTTGCACTACACCAACAGAGGTTGGTGGTGGCTGA 1200 0.4625 MLSELMNFLRACFRPSSEGYTRGGADAGGRQDGLLWYKXXXXGQHSNGEFSMAVVQANNLLEDQSQLESGSLSSNETGPYGTFVGVYDGHGGPETSRFINNNLFHHLKRFTAEQQSMSADVIRKAFQATEDGFTSLVARQWPLNPQIAAVGSCCLVGVICNGTLYVANLGDSRAVLGRLVKATGEVLAMQLSSEHNASIESVRQELHSLHPDDSNIVVLKHNVWRVKGLIQVSRSIGDVYLKKAEFNREPLYAKFRLRDPIKRPILSSEPSISVHPLLPQDQFVIFASDGLWEHLSNQEAVDIVQNNPRSGIARRLVKTALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVYLDSNLASRASAGKFPSVSIRGGGVNLPPNTLAPCTTPTEVGGG 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc130g00003 399 CDD PP2Cc 50 357 IPR001932 -
Stsc130g00003 399 Gene3D - 37 367 IPR036457 -
Stsc130g00003 399 Pfam Protein phosphatase 2C 80 326 IPR001932 -
Stsc130g00003 399 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169
Stsc130g00003 399 PANTHER PROTEIN PHOSPHATASE 46 356 IPR015655 GO:0004722|GO:0006470
Stsc130g00003 399 SMART PP2C_4 43 355 IPR001932 -
Stsc130g00003 399 SUPERFAMILY PP2C-like 61 358 IPR036457 -
Stsc130g00003 399 ProSiteProfiles PPM-type phosphatase domain profile. 68 357 IPR001932 -
Stsc130g00003 399 FunFam Phosphatase 2C family protein 36 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc130g00003 Stsc-Chr130 21085 23929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc130g00003 1 399 PP2C-type Phosphatase Gene Family AT4G38520 73.935 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc130g00003 - K01102 gmx:100794801 689.878