Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc130752g00001 GGTTCACGTAAACATGCTCGTAAAATACCAAAGGGCGTTATTCATGTTCAAGCTAGTTTCAACAATACCATTGTCACTGTTACCGATGTACGGGGTCGGGTAATTTCGTGGTCCTCCGCAGGTACTTGTGGATTCAAAGGTACGCGAAGGGGAACACCATTTGCCGCCCAAACCGCAGCAGGAAATGTTATTCGAACAGTAGCGAATCAAGGCATGCAACGAGCAGAAGTCATGATAAAGGGTCCCGGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGCATACTCTTAAATTTTATACGGGATGTAACCCCTATGCCACATAATGGGTGTAG 344 0.4651 GSRKHARKIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNVIRTVANQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGC 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc130752g00001 114 SUPERFAMILY Translational machinery components 7 114 - -
Stsc130752g00001 114 Pfam Ribosomal protein S11 12 114 IPR001971 GO:0003735|GO:0005840|GO:0006412
Stsc130752g00001 114 FunFam 30S ribosomal protein S11, chloroplastic 1 114 - -
Stsc130752g00001 114 PIRSF RPS11p_RPS11a_RPS14e_RPS11o 2 114 IPR001971 GO:0003735|GO:0005840|GO:0006412
Stsc130752g00001 114 Hamap 30S ribosomal protein S11 [rpsK]. 3 114 IPR001971 GO:0003735|GO:0005840|GO:0006412
Stsc130752g00001 114 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 11 114 IPR001971 GO:0003735|GO:0005840|GO:0006412
Stsc130752g00001 114 Gene3D Ribosomal protein S11 1 114 IPR036967 GO:0003735|GO:0005840|GO:0006412
Stsc130752g00001 114 NCBIfam 30S ribosomal protein S11 3 114 IPR019981 GO:0003735|GO:0005840|GO:0006412
Stsc130752g00001 114 ProSitePatterns Ribosomal protein S11 signature. 90 112 IPR018102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc130752g00001 Stsc-Chr130752 215 560 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc130752g00001 12 112 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 38.182 2.92e-15 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc130752g00001 K02948 - gmx:3989330 225.328