Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc1303g00001 ATGCCCGCAGATGAGATCAAATTGGAAGAAGGTGTTGCTAAGGGAACGTCGCAAAGTATTAGAGAAAATGGGTTTTGTGGTTCTCCCGAGGTAGTTCTTCTCATACAGAAGGTAATTGCGGAGACAATTGGGACATATTTCTTAGTATTCTTAGGATGTTGTGTAGTGGTTTTGAATGGTGTAGAAGAGAGTAAAGGTATGATATCATTTCCTGGGATATGTGTGACATGGGGTCTTGCAGTTATGATATTGATCTATGCTCTTGGTCACATTTCTGGTGCACATTTTAATCCAGCTGTTACCGTAAGCTTTGCCATCTATCGCCGTTTTCCTCTTAGACAGGTGCCTCTATATCTGGCAGCGCAAGTGCTAGGGTCAGTGTTAGCAAGTGGAACATTGTACCTGCTATTTGATGTGACAGTGGACTCATACTTCGGAACAGTGCCAAAAGGACCATACATTCAGTCTCTTGTATTTGAGATCCTCACTTCCTTTCTATTGATGTTTGTTGTCTCTGCCGTTACCTCCGATGATAGAGCAGTTGGAGAATTGGCAGGAATTGCTGTTGGTATGACAGTTCTAGTAGACGTTTTCGTTGCCGGGCCAGTTTCAGGAGCATCCATGAATCCAGCAAGAAGCTTAGGACCAGCATTGGTGATGCGAATTTACGATGGATTTTGGATTTATATAATTGGACCCTTTTTTGGTGCCATTCTCGGTGCCTCTGCCTACAACTTAATTAGATTCACTGAGAAACCACTCAAAGAAATTGGCCACAACTCTAGTTTCCTCAAAAGCATGTCCAAAGTATCAAGCTTTCGGATTTGA 828 0.4263 MPADEIKLEEGVAKGTSQSIRENGFCGSPEVVLLIQKVIAETIGTYFLVFLGCCVVVLNGVEESKGMISFPGICVTWGLAVMILIYALGHISGAHFNPAVTVSFAIYRRFPLRQVPLYLAAQVLGSVLASGTLYLLFDVTVDSYFGTVPKGPYIQSLVFEILTSFLLMFVVSAVTSDDRAVGELAGIAVGMTVLVDVFVAGPVSGASMNPARSLGPALVMRIYDGFWIYIIGPFFGAILGASAYNLIRFTEKPLKEIGHNSSFLKSMSKVSSFRI 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc1303g00001 275 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc1303g00001 275 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc1303g00001 275 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc1303g00001 275 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc1303g00001 275 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc1303g00001 275 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc1303g00001 275 CDD MIP 36 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc1303g00001 275 SUPERFAMILY Aquaporin-like 33 256 IPR023271 -
Stsc1303g00001 275 PANTHER AQUAPORIN NIP2-1 21 260 IPR034294 -
Stsc1303g00001 275 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Stsc1303g00001 275 NCBIfam MIP family channel protein 40 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc1303g00001 275 Gene3D Glycerol uptake facilitator protein. 5 261 IPR023271 -
Stsc1303g00001 275 Pfam Major intrinsic protein 34 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc1303g00001 Stsc-Chr1303 7307 9511 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc1303g00001 3 268 Major Intrinsic Protein MIP AT5G37810 60.886 8.28e-114 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc1303g00001 K09874 - gmx:100819179 363.999